View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_low_13 (Length: 249)
Name: NF11893_low_13
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 51729393 - 51729154
Alignment:
| Q |
1 |
actgagaaatctcagttgaagaaaattgaatatgcacaaactaaagaaaaagagagaaagattaca--caatagtgtcaaaagtaatcaaagaagaattc |
98 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51729393 |
actgagaaatctcagttgaagaaaattgaatatccacaaactaaagaaaaagagagaaagattacagacaatagtgtcaaaagtaatcaaagaagaattc |
51729294 |
T |
|
| Q |
99 |
cacatttccatacatagatatgaaacatactttggaagcacgnnnnnnntcctgatttacagcataactctcatttctttttcgacaactttgggcctca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729293 |
cacatttccatacatagatatgaaacatactttggaagcacgaaaaaaatcctgatttacagcataactctcatttctttttcgacaactttgggcctca |
51729194 |
T |
|
| Q |
199 |
agtttcaactttcaccacccagtgagcatacctaggttca |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
51729193 |
agtttcaactttcaccacccagtgagcatacctaggttca |
51729154 |
T |
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