View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11893_low_17 (Length: 234)

Name: NF11893_low_17
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11893_low_17
NF11893_low_17
[»] chr7 (8 HSPs)
chr7 (1-219)||(36894962-36895186)
chr7 (83-163)||(1359744-1359825)
chr7 (86-161)||(28514606-28514682)
chr7 (83-161)||(19677066-19677145)
chr7 (169-218)||(27235255-27235304)
chr7 (172-219)||(1359675-1359723)
chr7 (94-124)||(26203125-26203155)
chr7 (88-145)||(46242554-46242611)
[»] chr1 (5 HSPs)
chr1 (86-160)||(37276617-37276692)
chr1 (88-219)||(5069704-5069848)
chr1 (173-217)||(37275444-37275488)
chr1 (86-140)||(48282857-48282912)
chr1 (85-160)||(5178807-5178883)
[»] chr4 (4 HSPs)
chr4 (1-87)||(31682225-31682311)
chr4 (88-163)||(41142262-41142338)
chr4 (114-161)||(9093654-9093701)
chr4 (114-146)||(21755961-21755993)
[»] chr2 (3 HSPs)
chr2 (86-155)||(9021550-9021620)
chr2 (83-164)||(7141182-7141263)
chr2 (88-161)||(1870462-1870536)
[»] chr3 (1 HSPs)
chr3 (83-160)||(44291194-44291271)
[»] scaffold1372 (1 HSPs)
scaffold1372 (86-160)||(1238-1312)
[»] chr5 (4 HSPs)
chr5 (86-162)||(3360643-3360720)
chr5 (86-161)||(22294055-22294130)
chr5 (85-164)||(1920711-1920791)
chr5 (88-155)||(30251921-30251989)
[»] chr8 (3 HSPs)
chr8 (87-161)||(20542458-20542533)
chr8 (85-113)||(34127787-34127815)
chr8 (88-140)||(39534107-39534159)
[»] chr6 (1 HSPs)
chr6 (85-141)||(6770925-6770982)
[»] scaffold0299 (1 HSPs)
scaffold0299 (85-141)||(17982-18038)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 36895186 - 36894962
Alignment:
Q  1 atagtacacctctgatatgtagtaagttaaggtgcatgttatgttccataatgtaaataattgtaaaatggactttaaaaagaataagggtcttgttaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  36895186 atagtacacctctgatatgtagtaagttaaggtgcatgttatgttccataatgtgaataattggaaaatggacttgaaaaagaataagggtcttgttaac 36895087  T
Q  101 cagtgcccccgggcattggttaaggaacccataaatagaaattttgccttggaaacataaggtgctac------------aatgattacattactttatt 188  Q
    || |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||     
T  36895086 caatgc------gcattggttaaggaacccataaatagaaattttgccttggaaacataaggtgctacttttgaccaaataatgattacattactttatc 36894993  T
Q  189 gtgaaaactttcttgttttggatgtttaacc 219  Q
    | |||||||||||||||||||||||||||||    
T  36894992 gagaaaactttcttgttttggatgtttaacc 36894962  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 1359825 - 1359744
Alignment:
Q  83 aataagggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaattttgccttggaaacataaggt 163  Q
    ||||||||||||||||||||||||  |  ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  1359825 aataagggtcttgttaaccagtgcttcttgggcattggttaaggaatccatgaatagaaattttgtcttggaaacataaggt 1359744  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 28514606 - 28514682
Alignment:
Q  86 aagggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaattttgccttggaaacataag 161  Q
    ||||||||||||||| |||||||   |||||||| |||||||||||||||| ||||||| ||||||| ||| |||||    
T  28514606 aagggtcttgttaacaagtgccctaagggcattgtttaaggaacccataaaaagaaattatgccttgaaaatataag 28514682  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 19677145 - 19677066
Alignment:
Q  83 aataagggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaattttgccttggaaacataag 161  Q
    ||||||||||||| |||||| ||||| | ||||||||||||||||| | | |||||||||||||| |||| ||| |||||    
T  19677145 aataagggtcttgctaaccaatgccctcagggcattggttaaggaatcgacaaatagaaattttgtcttgaaaatataag 19677066  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 27235304 - 27235255
Alignment:
Q  169 aatgattacattactttattgtgaaaactttcttgttttggatgtttaac 218  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||||||    
T  27235304 aatgattacatcatttttgtgtgaaaactttcttgttttggatgtttaac 27235255  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 1359723 - 1359675
Alignment:
Q  172 gattacattactttatt-gtgaaaactttcttgttttggatgtttaacc 219  Q
    |||||||||||||| || |||||||||||||||||||||||| ||||||    
T  1359723 gattacattactttttttgtgaaaactttcttgttttggatgcttaacc 1359675  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Complemental strand, 26203155 - 26203125
Alignment:
Q  94 tgttaaccagtgcccccgggcattggttaag 124  Q
    |||||||||||||||||||||||||||||||    
T  26203155 tgttaaccagtgcccccgggcattggttaag 26203125  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 46242554 - 46242611
Alignment:
Q  88 gggtcttgttaaccagtgcccccgggcattggttaaggaacccataaatagaaatttt 145  Q
    ||||||||||||||||||| || | | |||| ||||||||  ||||||||||||||||    
T  46242554 gggtcttgttaaccagtgctccggtgaattgattaaggaattcataaatagaaatttt 46242611  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 37276692 - 37276617
Alignment:
Q  86 aagggtcttgttaaccagtgcccccgg-gcattggttaaggaacccataaatagaaattttgccttggaaacataa 160  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||    
T  37276692 aagggtcttgttaactagtgcccccggagcattggttaaggaacccattaatagaaattttgtcttggaaacataa 37276617  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 5069848 - 5069704
Alignment:
Q  88 gggtcttgttaaccagtgcccccggg-cattggttaaggaacccataaatagaaattttgccttggaaacataaggtgct------------acaatgat 174  Q
    |||||||||||||| |||  || ||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||| |            ||||||||    
T  5069848 gggtcttgttaaccggtgttcctgggacattggttaagaaacccataaatagaaattttgtcttggaaatataaggtgttacttttgactaaacaatgat 5069749  T
Q  175 tacattactttattgtgaaaactttcttgttttggatgtttaacc 219  Q
    ||||| | |||||||||||||||| ||||||||||||||||||||    
T  5069748 tacatgattttattgtgaaaacttacttgttttggatgtttaacc 5069704  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 37275488 - 37275444
Alignment:
Q  173 attacattactttattgtgaaaactttcttgttttggatgtttaa 217  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  37275488 attacattactttattgtaaaaactttattgttttggatgtttaa 37275444  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 48282857 - 48282912
Alignment:
Q  86 aagggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaa 140  Q
    |||||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||    
T  48282857 aagggtcttgttaaccggtgcccccggggcactggttaaggaatctataaatagaa 48282912  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 5178883 - 5178807
Alignment:
Q  85 taagggtcttgttaaccagtgcccccggg-cattggttaaggaacccataaatagaaattttgccttggaaacataa 160  Q
    |||||||||||||||||| |||| ||||| || | ||||||||| ||| || ||||||  ||| |||||||||||||    
T  5178883 taagggtcttgttaaccaatgcctccgggacactcgttaaggaatccaaaagtagaaaaattgtcttggaaacataa 5178807  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31682311 - 31682225
Alignment:
Q  1 atagtacacctctgatatgtagtaagttaaggtgcatgttatgttccataatgtaaataattgtaaaatggactttaaaaagaataa 87  Q
    |||||| | ||||||| | ||||||||||||||||| ||||||||||||||| ||| |||| | ||||||||||| |||||||||||    
T  31682311 atagtataactctgatctttagtaagttaaggtgcacgttatgttccataatttaagtaatcggaaaatggacttgaaaaagaataa 31682225  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 41142262 - 41142338
Alignment:
Q  88 gggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaattttgccttggaaacataaggt 163  Q
    ||||||||||||||||||||||| |||||||||||||||||  ||| |||| |||||||| |||| ||| |||||||    
T  41142262 gggtcttgttaaccagtgcccccggggcattggttaaggaattcatgaataaaaattttgtcttgaaaaaataaggt 41142338  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 9093701 - 9093654
Alignment:
Q  114 cattggttaaggaacccataaatagaaattttgccttggaaacataag 161  Q
    ||||| |||||||||||||||| ||||||||||||||| ||| |||||    
T  9093701 cattgtttaaggaacccataaaaagaaattttgccttgaaaatataag 9093654  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 21755993 - 21755961
Alignment:
Q  114 cattggttaaggaacccataaatagaaattttg 146  Q
    ||||||||||||||| |||||||||||||||||    
T  21755993 cattggttaaggaactcataaatagaaattttg 21755961  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 9021620 - 9021550
Alignment:
Q  86 aagggtcttgttaaccagtgcccccggg-cattggttaaggaacccataaatagaaattttgccttggaaa 155  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  9021620 aagggtcttattaatcagtgcccccggggcattggttaaggaacccataactagaaattttgtcttggaaa 9021550  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 7141263 - 7141182
Alignment:
Q  83 aataagggtcttgttaaccagtgcccccgggcattggttaaggaacccataaatagaaattttgccttggaaacataaggtg 164  Q
    |||| |||||||||||| | ||||||| | ||||||||||||||  | || ||||||||||||| |||| ||||||||||||    
T  7141263 aatatgggtcttgttaatcggtgccccagcgcattggttaaggattcaatgaatagaaattttgtcttgaaaacataaggtg 7141182  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 1870462 - 1870536
Alignment:
Q  88 gggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaattttgccttggaaacataag 161  Q
    |||||||| |||||||||||| | ||||| ||||||||||| | ||||||||||| |||| |||| ||| |||||    
T  1870462 gggtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataag 1870536  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 44291194 - 44291271
Alignment:
Q  83 aataagggtcttgttaaccagtgcccccgggcattggttaaggaacccataaatagaaattttgccttggaaacataa 160  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||| || || |||||||| ||||    
T  44291194 aataagggtcttgttaaccagtgccccggggcactggttaaggaatctataaatagaatttctgtcttggaaatataa 44291271  T

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Target: scaffold1372 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 1238 - 1312
Alignment:
Q  86 aagggtcttgttaaccagtgcccccgggcattggttaaggaacccataaatagaaattttgccttggaaacataa 160  Q
    |||||||||||||||| ||||||| |||||  |||||||||| | |||||||||| || || |||||||| ||||    
T  1238 aagggtcttgttaaccggtgccccggggcacgggttaaggaatctataaatagaatttctgtcttggaaatataa 1312  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 3360643 - 3360720
Alignment:
Q  86 aagggtcttgttaaccagtgcccccgg-gcattggttaaggaacccataaatagaaattttgccttggaaacataagg 162  Q
    |||| |||||||||||| ||| ||| | ||||||||||||||| ||||||||| ||||||||  ||||||| ||||||    
T  3360643 aaggctcttgttaaccaatgcacccagagcattggttaaggaatccataaataaaaattttgtgttggaaatataagg 3360720  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 22294130 - 22294055
Alignment:
Q  86 aagggtcttgttaaccagtgcccccgggcattggttaaggaacccataaatagaaattttgccttggaaacataag 161  Q
    |||||||||| ||| ||||||| | | ||| ||||||||||| | | |||||||||||||| |||||||| |||||    
T  22294130 aagggtcttgctaaacagtgcctcagagcaatggttaaggaatctacaaatagaaattttgtcttggaaatataag 22294055  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 1920711 - 1920791
Alignment:
Q  85 taagggtcttgttaaccagtgcccccgggc-attggttaaggaacccataaatagaaattttgccttggaaacataaggtg 164  Q
    |||| |||||||||||| ||||||| |||  |||||||||| || | || ||||||||||||| ||| |||| ||||||||    
T  1920711 taagagtcttgttaacccgtgcccctggggtattggttaagaaatctatgaatagaaattttgtcttagaaatataaggtg 1920791  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 30251921 - 30251989
Alignment:
Q  88 gggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaattttgccttggaaa 155  Q
    |||||||| ||||||||||||   ||||| ||||||||||  |||| ||||||||||||| ||||||||    
T  30251921 gggtcttggtaaccagtgccctaagggcaatggttaaggattccattaatagaaattttgtcttggaaa 30251989  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 20542533 - 20542458
Alignment:
Q  87 agggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaattttgccttggaaacataag 161  Q
    ||||||||| ||| |||||||| | ||||||||||||||||| | | |||||||||||| | |||||||| |||||    
T  20542533 agggtcttgctaaacagtgccctcagggcattggttaaggaatctacaaatagaaatttcgtcttggaaatataag 20542458  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 34127815 - 34127787
Alignment:
Q  85 taagggtcttgttaaccagtgcccccggg 113  Q
    |||||||||||||||||||||||||||||    
T  34127815 taagggtcttgttaaccagtgcccccggg 34127787  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 39534107 - 39534159
Alignment:
Q  88 gggtcttgttaaccagtgcccccgggcattggttaaggaacccataaatagaa 140  Q
    |||||||||||||| |||||||||||||| |||||| ||| | |||| |||||    
T  39534107 gggtcttgttaaccggtgcccccgggcatgggttaaagaatctataattagaa 39534159  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 6770982 - 6770925
Alignment:
Q  85 taagggtcttgttaaccagtgccccc-gggcattggttaaggaacccataaatagaaa 141  Q
    ||||||||||| ||||||||||||   ||||||||||||||||| | |||||||||||    
T  6770982 taagggtcttgctaaccagtgcccttagggcattggttaaggaaactataaatagaaa 6770925  T

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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 17982 - 18038
Alignment:
Q  85 taagggtcttgttaaccagtgcccccgggcattggttaaggaacccataaatagaaa 141  Q
    ||||||||||||||  |||||||| | | |||||||||||||| | |||||||||||    
T  17982 taagggtcttgttattcagtgccctcagacattggttaaggaaactataaatagaaa 18038  T

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