View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_low_2 (Length: 466)
Name: NF11893_low_2
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 33866004 - 33866442
Alignment:
| Q |
13 |
agatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctg |
112 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866004 |
agatggagtagattacgtttttattgtgtacctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctt |
33866103 |
T |
|
| Q |
113 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgctannnnnnnnaaggtaagactaagagatgaccacca |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33866104 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgcta-tttttttaaggtaagactaagagatgaccacca |
33866202 |
T |
|
| Q |
213 |
ttttcaatttctttcgggttcttacttgatattttttattcatctatttctactattcacattctgagcgcacaccatgtgtttgatcagggttgtcttt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866203 |
ttttcaatttctttcgggttcttacttgatattttttattcatctatttctactattcacattctgagcgcacaccatgtgtttgatcagggttgtcttt |
33866302 |
T |
|
| Q |
313 |
gaagctcgcactcctgctact-nnnnnnncaaagaatggcaagagcaacttcccgttgctgttctcaaagctgaagaaatcatgtattccaaagaaatca |
411 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33866303 |
gaagctcgcactcctgctactaaaaaaaacaaagaatggcaagagcaacttcccactgttgttctcaaagctgaagaaatcatgcattccaaagaaatca |
33866402 |
T |
|
| Q |
412 |
tgttatccctttgagaaccccattcaagaatcaaatatgt |
451 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33866403 |
tgttatccctttgagaaccccattcaagaatcaaatatgt |
33866442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 11075276 - 11075716
Alignment:
| Q |
13 |
agatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctg |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
11075276 |
agatggagaagattacgtttttattgtgtgcctcagcctttaaggttctgatttgcggttcttgctcaatttctatcccattgattaatttcgtcagctt |
11075375 |
T |
|
| Q |
113 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgctannnnnnnnaaggtaagactaagagatgaccacca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||| |
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|
| T |
11075376 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagaattgttcttctcgactcacgctatattttt-aaggtaagactaagagatgaccacca |
11075474 |
T |
|
| Q |
213 |
ttttcaatttctttcgggttcttacttgatatttt-ttattcatctatttctactattcacattctgagcgcacaccatgtgtttgatcagggttgtctt |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11075475 |
ttttcaatttctttcgggttcttacttgatatttttttattcatctatttctactattcacattctgagcgcacaccatgtgtttgatcagggttgtctt |
11075574 |
T |
|
| Q |
312 |
tgaagctcgcactcctgctact--nnnnnnncaaagaatggcaagagcaacttcccgttgctgttctcaaagctgaagaaatcatgtattccaaagaaat |
409 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11075575 |
tgaagctcgcactcctgctactaaaaaaaaacaaagaatggcaagagcaacttcccgttgttgttctcaaagctgaagaaatcatgtattccaaagaaat |
11075674 |
T |
|
| Q |
410 |
catgttatccctttgagaaccccattcaagaatcaaatatgt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11075675 |
catgttatccctttgagaaccccattcaagaatcaaatatgt |
11075716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 23216688 - 23216369
Alignment:
| Q |
13 |
agatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctg |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23216688 |
agatggagaagattacgtttttattgtgtgcctcggcctttaaggaactgatttgcggttcttgctcaattcctatcccattgattaatttcgtcagctt |
23216589 |
T |
|
| Q |
113 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgctannnnnnnnaaggtaagactaagagatgaccacca |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |
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|
| T |
23216588 |
atgtcgttacatgttcaattcaccatgtgtttccggcaacagagttgttcttctcgacacacgctattttttt-aaggtaagattaagagatgaccacca |
23216490 |
T |
|
| Q |
213 |
ttttcaatttctttcgggttcttacttgatattttttattcatctatttctactattcacattctgagcgcacaccatgtgtttgatcagggttgtcttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23216489 |
ttttcaatttctttcgggttcttacttgatattttttattcatctatttctactcttcacattctgagcgcacaccatgtgtttgatcagggttgtcttt |
23216390 |
T |
|
| Q |
313 |
gaagctcgcactcctgctact |
333 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
23216389 |
gaagctcgcactcctgctact |
23216369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 264 - 451
Target Start/End: Complemental strand, 23216341 - 23216152
Alignment:
| Q |
264 |
actattcacattctgagcgcacaccatgtgtttgatcagggttgtctttgaagctcgcactcctgctactnnnnnnn--caaagaatggcaagagcaact |
361 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23216341 |
actnttcacattctgagcgcacaccatgtgtttgatcagggttgtctttgaagctcgcactcctgctactaaaaaaaaacaaagaatggcaagagcaact |
23216242 |
T |
|
| Q |
362 |
tcccgttgctgttctcaaagctgaagaaatcatgtattccaaagaaatcatgttatccctttgagaaccccattcaagaatcaaatatgt |
451 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23216241 |
tccctttgttgttctcaaagctgaagaaatcatgtattccaaagaaatcatgttatccctttgagaaccccattcaagaatcaaatatgt |
23216152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 405
Target Start/End: Complemental strand, 47348542 - 47348418
Alignment:
| Q |
282 |
gcacaccatgtgtttgatcagggttgtctttgaagctcgcactcctgctactnnnnnnn-caaagaatggcaagagcaacttcccgttgctgttctcaaa |
380 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |||||| |||||| |||||||||||||||| ||||||| |||| |||||||||| |
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|
| T |
47348542 |
gcacaccatgtgtttgattagggttgtcactgaagctcacactccagctactaaaaaaaacaaagaatggcaagagaaacttcctgttgttgttctcaaa |
47348443 |
T |
|
| Q |
381 |
gctgaagaaatcatgtattccaaag |
405 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
47348442 |
gctgaagaaatcatgtattccaaag |
47348418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 17980084 - 17980047
Alignment:
| Q |
414 |
ttatccctttgagaaccccattcaagaatcaaatatgt |
451 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17980084 |
ttatccctttgagaactccattcaagaatcaaatatgt |
17980047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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