View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_low_3 (Length: 452)
Name: NF11893_low_3
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 31714241 - 31713806
Alignment:
| Q |
1 |
tcattgaataagttgttaaatttaggctcacgcgctgcataaaccaatattaacatcccatgtgtagttccaaatgttgaaggatcatcggttttgaacc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| || | || ||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
31714241 |
tcattgaataagttgttaaatttaggctcacgcgccgcataatcccacatcgacatcccatgtgtagttccaaatgttgaaggatcatcagtttttaacc |
31714142 |
T |
|
| Q |
101 |
aactggacatttcatgccacgggtttgccaaaatgggatgtagtatggcttgcaaaaatggtgtcacactcatggggtgatccttaagcaacagtataga |
200 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31714141 |
aaccggacatttcatgccacgggtttgccaaaattggatgtagtacggcttgcaaaaatggtgtcacactcatggggtgatccttaagcaacagtataga |
31714042 |
T |
|
| Q |
201 |
ttcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagattgagtcatgattcgcattaagcgatagatg |
300 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31714041 |
ttcatcggttagaatataatcgatttctagctcattctcagtaacatcgtgttcatagaagaagccagattgagtcatgatttgcattaagcgatagatg |
31713942 |
T |
|
| Q |
301 |
caggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtataatatcaggtattcctaagtcaa |
400 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31713941 |
caggatttttttgaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtataatatcaggtattcctaagtcaa |
31713842 |
T |
|
| Q |
401 |
ctacacacttaagtgacatggaatttatgaagttgc |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31713841 |
ctacacacttaagtgacatggaatttatgaagttgc |
31713806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 157 - 435
Target Start/End: Complemental strand, 31734493 - 31734215
Alignment:
| Q |
157 |
aatggtgtcacactcatggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcat |
256 |
Q |
| |
|
||||||||||||||||| || | ||||||||| || | | ||||| |||| |||| ||||||||| |||||| |||||||| | | || ||| |||| | |
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| T |
31734493 |
aatggtgtcacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaatttctggctcattcgccgcaatattttgttgag |
31734394 |
T |
|
| Q |
257 |
agaagaagccagattgagtcatgattcgcattaagcgatagatgcaggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcat |
356 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
31734393 |
agaagaagccagagtgagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggattggtagtgaagaaatgagttttgagataggcat |
31734294 |
T |
|
| Q |
357 |
gggtttgccatagttgtgtataatatcaggtattcctaagtcaactacacacttaagtgacatggaatttatgaagttg |
435 |
Q |
| |
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|||||| |||| ||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
31734293 |
gggtttcccatggttgtgtataatatctggtatgcctaagtcaactacacatttaagcgacattgaatttatgaagttg |
31734215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 31702809 - 31702375
Alignment:
| Q |
1 |
tcattgaataagttgttaaatttaggctcacgcgctgcataaaccaatattaacatcccatgtgtagttccaaatgttgaaggatcatcggttttgaacc |
100 |
Q |
| |
|
||||||||||||||| ||||||| | |||| ||| |||| || ||| ||||||| ||||| ||| ||||||||| ||||||||| |||| |||| |
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| T |
31702809 |
tcattgaataagttgctaaatttggagtcacacgcaacatattcccataacaacatcctgtgtgtcgtttcaaatgttgtaggatcatcattttttaacc |
31702710 |
T |
|
| Q |
101 |
aactggacatttcatgccacgggtttgccaaaatgggatgtagtatggcttgcaaaaatggtgtcacactcatggggtgatccttaagcaacagtataga |
200 |
Q |
| |
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|| | || | || ||||||||| |||| ||||| |||| || || || || | |||||||||||| ||||| || | |||||||| || | ||| || |
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| T |
31702709 |
aagtagagaattgatgccacggatttgtcaaaactggatcgagcatcgcgtgtacaaatggtgtcacgctcatcggattgtccttaagtaataatatcga |
31702610 |
T |
|
| Q |
201 |
ttcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagattgagtcatgattcgcattaagcgatagatg |
300 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||| |||||||| | || | ||||||| | ||| |||||||| |||||||| ||||||| ||| |
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| T |
31702609 |
tgcatcggttaacatatactcgatttctagctcattctcggtaacattatattgagagaagaaactagaatgagtcattattcgcatcaagcgatgaatg |
31702510 |
T |
|
| Q |
301 |
caggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtataatatcaggtattcctaagtcaa |
400 |
Q |
| |
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|| | ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||| |||||||| ||||||||||| ||||| |||| |
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| T |
31702509 |
aagcatgtttttgaagggtggattggtagcaaagaaataagttttgagagtgatatgggtttgccataattgtgtatgatatcaggtatgcctaaatcaa |
31702410 |
T |
|
| Q |
401 |
ctacacacttaagtgacatggaatttatgaagttg |
435 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||| |
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| T |
31702409 |
ccacacatttaagggacatggaatttatgaagttg |
31702375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 434
Target Start/End: Complemental strand, 31711086 - 31710810
Alignment:
| Q |
158 |
atggtgtcacactcatggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcata |
257 |
Q |
| |
|
|||||| ||||||||| || | ||||| || || ||| ||||| |||| |||| ||||||||| ||||||||||||||| | |||| || | || | | |
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|
| T |
31711086 |
atggtgccacactcattggattgtccttgagtaatagtttagatgcatcagttaacatatactcaatttctagctcattccctataacgtttttttgaga |
31710987 |
T |
|
| Q |
258 |
gaagaagccagattgagtcatgattcgcattaagcgatagatgcaggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatg |
357 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||| |||| | ||||||||||||| ||||||||||||||||||||| ||||| ||| |
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|
| T |
31710986 |
gaagaagccggagtgagtcatgattcgcatcaagcgatgaatgccgtggttttttgaagggtggattgatagtgaagaaatgagttttgagagtggtatg |
31710887 |
T |
|
| Q |
358 |
ggtttgccatagttgtgtataatatcaggtattcctaagtcaactacacacttaagtgacatggaatttatgaagtt |
434 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
31710886 |
ggtttgccatagttgtgtatgatatctggtatgcctaagtcaactacacatttaagtgacatggaatttatgaagtt |
31710810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 198 - 435
Target Start/End: Complemental strand, 31684073 - 31683836
Alignment:
| Q |
198 |
agattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagattgagtcatgattcgcattaagcgatag |
297 |
Q |
| |
|
|||| |||| |||| ||| ||||| || ||||||||||||||||||| ||| |||| | |||||| |||||| | ||||||||||| || ||||||| | |
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|
| T |
31684073 |
agatacatcagttaacatgtactcaatctctagctcattctcagtaatattttgttgagagaagatgccagaatacgtcatgattcgtatcaagcgatgg |
31683974 |
T |
|
| Q |
298 |
atgcaggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtataatatcaggtattcctaagt |
397 |
Q |
| |
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| | || | | ||||| |||||| |||||| |||||||||||| |||| ||| ||| | ||||| |||||||| ||||| ||||| ||||||| |
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|
| T |
31683973 |
aagtagcaagtttttgtagggttgattggaagtgaactaatgagttttgagagtgacataggtctaccataattgtgtatgatatctggtatgcctaagt |
31683874 |
T |
|
| Q |
398 |
caactacacacttaagtgacatggaatttatgaagttg |
435 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
31683873 |
cgactacacatttaagagacatggaatttatgaagttg |
31683836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 431
Target Start/End: Complemental strand, 30569923 - 30569805
Alignment:
| Q |
313 |
gaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtataatatcaggtattcctaagtcaactacacacttaa |
412 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| || |||| ||||||||||||||||| ||| ||||| | || |||| | |||| |||| |
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|
| T |
30569923 |
gaagggtggattggtaacaaagaaatgagttttgagagtgggattggttggccatagttgtgtataacatctggtatacacaattcaattgcacatttaa |
30569824 |
T |
|
| Q |
413 |
gtgacatggaatttatgaa |
431 |
Q |
| |
|
| ||||| || |||||||| |
|
|
| T |
30569823 |
gggacattgagtttatgaa |
30569805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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