View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_low_4 (Length: 435)
Name: NF11893_low_4
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 44694351 - 44693938
Alignment:
| Q |
1 |
tagctcctagaaaaagatcaggtgaatgtgtatggctcttatcagttttatgttggcagtcattatcttcatcttcttcagcatcccataggaattttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694351 |
tagctcctagaaaaagatcaggtgaatgtgtatggctcttatcagttttatgttggcagtcattatcttcatcttcttcagcatcccataggaattttgc |
44694252 |
T |
|
| Q |
101 |
atatgaagccaagacatagctgatgtgataataatattaatttactaattagtttttatatattacattcaagaaaaatcaggacacaaacaaacccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694251 |
atatgaagccaagacatagctgatgtgataataatattaatttactaattagtttttatatattacattcaagaaaaatcaggacacaaacaaacccttg |
44694152 |
T |
|
| Q |
201 |
ttatttgtttgnnnnnnnnnnnnnnnnnnnnnnnngcaaacagtctaaagaatttttcttggacgatcaataattatttttgaaaattagtaattacgta |
300 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694151 |
ttatttgtttgaaaaaaaagcatgaaaaaaaaaaagcaaaacgtctaaagaatttttcttggacgatcaataattatttttgaaaattagtaattacgta |
44694052 |
T |
|
| Q |
301 |
gttgttatagttcaccagagtttgaatctggtgt-ctccaacttcctagacccttaacacaaatagttgagctacccaccccaaagataatttaatatta |
399 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694051 |
gttgttatagttcaccagagtttgaatctggtgtcctccaacttcctagtcccttaacacaaatagttgagctacccaccccaaagataatttaatatta |
44693952 |
T |
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| Q |
400 |
tcacaagttcgcta |
413 |
Q |
| |
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| T |
44693951 |
tcacaagttcgcta |
44693938 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 2305691 - 2305751
Alignment:
| Q |
58 |
agtcattatcttcatcttcttcagcatcccataggaattttgcatatgaagccaagacata |
118 |
Q |
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|||| |||||||| || | |||||||||||| |||||||| ||||||||||| | |||||| |
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| T |
2305691 |
agtctttatcttcttcattttcagcatcccaaaggaatttggcatatgaagctaggacata |
2305751 |
T |
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