View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11893_low_5 (Length: 383)
Name: NF11893_low_5
Description: NF11893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11893_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 44954087 - 44953738
Alignment:
| Q |
13 |
gagatatgacaactcatgttcaatatcgaacaacccttcaaatatcattgtatcagattgaattagaggagtaattttattcacataacataaaaaagag |
112 |
Q |
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| T |
44954087 |
gagatatgacaactcatgttcaatatcgaacaacccttcaaatatcattgtatcagattgaattagaggaggtattttattcacataacatacaaaagag |
44953988 |
T |
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| Q |
113 |
tcaaacattaatcacaatgacgacaacaacaacatagatgggagcttgtgaatgataaaacaattataaaactctattaatattgaacattatcatttgg |
212 |
Q |
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| T |
44953987 |
tcaaacattaatcacaatgacgacaacaaca---tagatgagagcttgtgaatgataaaacaattataaaactctattaatattgaacattatcatttgg |
44953891 |
T |
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| Q |
213 |
catggaatctcaaattttatgtttatctcatgtcaatcaatcttcggtatacttcaatttttgtatacttcatctatttcaacttgtttgaaatatatca |
312 |
Q |
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| T |
44953890 |
catggaatctcaaattttatgtttatctcatgtcaatcaatcttcggtatacttcaatttttgtatacttaatctatttcaacttgtttgaaatatatca |
44953791 |
T |
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| Q |
313 |
acaatttgttagaaattgaaatatgtagtagtacttaaattgaaccccaagaa |
365 |
Q |
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| T |
44953790 |
acaatttgttagaaattgaaatatgtagtagtacttaaattgaaccccaagaa |
44953738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 351
Target Start/End: Original strand, 44994770 - 44994845
Alignment:
| Q |
276 |
tatacttcatctatttcaacttgtttgaaatatatcaacaatttgttagaaattgaaatatgtagtagtacttaaa |
351 |
Q |
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| T |
44994770 |
tatacttcatctatttcaacctgtttgaaatatatcaacaatttgtcagaaattgacatatgtagtagtacataaa |
44994845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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