View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_high_11 (Length: 518)
Name: NF11894_high_11
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Complemental strand, 4179607 - 4179122
Alignment:
| Q |
17 |
acatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattggccatcaatttcattc |
116 |
Q |
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| T |
4179607 |
acatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattggccatcaatttcattc |
4179508 |
T |
|
| Q |
117 |
cagaaaacaaggtgagcctcatgatcatcatcgtgttcatttttattcgactcaaggaactcagataagcttgtagggtaatgagcctctaatagtcgaa |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4179507 |
cagaaaacaaggcgagcctcatgatcatcatcgtgttcatttttattcgactcaaggaactcagataagcttgtagggtaatgagcctctaagagtcgaa |
4179408 |
T |
|
| Q |
217 |
ttccagaatcattagacacaatttccaatcctgttatgtcccttttttggactcgaccagctagtagaggatgatccaataaggccctagcaagtgattc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4179407 |
ttccagaatcattagacacaatttccaatcctgttatgtcccttttttggactcgaccagccagtagaggatgatccaataaggccctagcaagtgattc |
4179308 |
T |
|
| Q |
317 |
cacaatccaaccagttaaggaccaatcatgatcctcctcttcaaccttctcatagtacaataccatttggtagcatccctcaattgtcctctttgtttca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179307 |
cacaatccaaccagttaaggaccaatcatgatcctcctcttcaaccttctcatagtacaataccatttggtagcatccctcaattgtcctctttgtttca |
4179208 |
T |
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| Q |
417 |
tcattgaatagaatttgacaaacttgtcgtggttcggttattttagctggtgacacacttgtcacagctacaatttgggagccaac |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179207 |
tcattgaatagaatttgacaaacttgtcgtggttcggttattttagctggtgacacacttgtcacagctacaatttgggagccaac |
4179122 |
T |
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