View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_high_14 (Length: 475)
Name: NF11894_high_14
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 139 - 469
Target Start/End: Original strand, 36223167 - 36223497
Alignment:
| Q |
139 |
atatgtactgtgtgagaaatgaagtaacataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcata |
238 |
Q |
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| T |
36223167 |
atatgtactgtgtgagaaatgaagtaacataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcata |
36223266 |
T |
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| Q |
239 |
cggttcttgccaatagggtattgatcatagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtcca |
338 |
Q |
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| T |
36223267 |
cggttcttgccaatagggtattgatcatagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtcca |
36223366 |
T |
|
| Q |
339 |
aagttgatgcaatcacagccaaagatctactttgaattgaagcataaacttttgctacaaatagcaccatgttccctatgttagataaataaattgccac |
438 |
Q |
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| T |
36223367 |
aagttgatgcaatcacagccaaagatctactttgaattgaagcataaacttttgctacaaatagcaccatgttccctatgttagataaataaattgccac |
36223466 |
T |
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| Q |
439 |
cttctcattcctttcaagttgcttcatctca |
469 |
Q |
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| T |
36223467 |
cttctcattcctttcaagttgcttcatctca |
36223497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36223066 - 36223165
Alignment:
| Q |
1 |
ttacttttctacctttacaatgatttccctcattgattcaaatagtatttgcaatccaagagttgccatgacagaagcaaatacaactatcccctgtaaa |
100 |
Q |
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| T |
36223066 |
ttacttttctacctttacaatgatttccctcattgattcaaatagtatttgcaatccaagagttgccatgacagaagcaaatacaactatcccctgtaaa |
36223165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 407
Target Start/End: Original strand, 18644946 - 18645061
Alignment:
| Q |
292 |
agtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacagccaaagatctactttgaattgaagcataaactttt |
391 |
Q |
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||||||||| | ||| || || ||||| ||||||||||| || ||||| || || ||||||||||| || ||||| || | |||||| ||||| || || |
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| T |
18644946 |
agtgaaccacaatatgaaccccgacaaaagatccaagagagaatccaaggtggaagcaatcacagctaatgatctgctctcaattgatgcatataccttc |
18645045 |
T |
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| Q |
392 |
gctacaaatagcacca |
407 |
Q |
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||| |||||||||||| |
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| T |
18645046 |
gctgcaaatagcacca |
18645061 |
T |
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