View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_high_20 (Length: 397)

Name: NF11894_high_20
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_high_20
NF11894_high_20
[»] chr5 (16 HSPs)
chr5 (13-395)||(10700753-10701136)
chr5 (198-397)||(316630-316827)
chr5 (278-397)||(35616116-35616234)
chr5 (291-397)||(13488162-13488268)
chr5 (291-397)||(3325873-3325978)
chr5 (198-391)||(4160499-4160690)
chr5 (208-303)||(8019464-8019558)
chr5 (291-397)||(8566049-8566155)
chr5 (291-397)||(39468652-39468758)
chr5 (291-397)||(42428533-42428639)
chr5 (310-397)||(10054919-10055006)
chr5 (291-330)||(28750825-28750864)
chr5 (291-330)||(42926852-42926891)
chr5 (204-394)||(27015404-27015593)
chr5 (291-397)||(33831639-33831745)
chr5 (291-323)||(32636783-32636815)
[»] chr4 (41 HSPs)
chr4 (289-396)||(33089835-33089942)
chr4 (291-397)||(48143001-48143108)
chr4 (257-397)||(22882854-22882994)
chr4 (257-397)||(22934518-22934658)
chr4 (291-397)||(34570517-34570623)
chr4 (215-397)||(32091362-32091543)
chr4 (310-389)||(21703947-21704027)
chr4 (291-397)||(5429638-5429744)
chr4 (203-337)||(33989733-33989867)
chr4 (291-397)||(54200009-54200115)
chr4 (291-397)||(56178740-56178845)
chr4 (291-396)||(5207946-5208051)
chr4 (291-397)||(47038513-47038618)
chr4 (198-397)||(55085468-55085667)
chr4 (291-397)||(36994483-36994589)
chr4 (291-397)||(52095465-52095571)
chr4 (291-397)||(5871779-5871885)
chr4 (252-396)||(12073314-12073456)
chr4 (289-330)||(29056315-29056356)
chr4 (203-397)||(54882891-54883085)
chr4 (291-394)||(52467460-52467563)
chr4 (354-397)||(379402-379445)
chr4 (354-397)||(8665430-8665473)
chr4 (354-397)||(9927561-9927604)
chr4 (291-330)||(12745606-12745645)
chr4 (291-330)||(13009601-13009640)
chr4 (291-330)||(26175806-26175845)
chr4 (354-397)||(26364258-26364301)
chr4 (291-330)||(48893812-48893851)
chr4 (292-330)||(3913408-3913446)
chr4 (179-241)||(33089735-33089797)
chr4 (355-397)||(33989867-33989909)
chr4 (310-397)||(34112793-34112882)
chr4 (291-397)||(38811292-38811397)
chr4 (354-395)||(5349932-5349973)
chr4 (291-323)||(4587917-4587949)
chr4 (357-397)||(37740650-37740690)
chr4 (310-397)||(44967932-44968020)
chr4 (291-323)||(51337023-51337055)
chr4 (296-392)||(52065561-52065656)
chr4 (306-397)||(53345191-53345282)
[»] chr3 (24 HSPs)
chr3 (301-397)||(3148094-3148190)
chr3 (276-397)||(26323177-26323298)
chr3 (290-397)||(35138809-35138916)
chr3 (291-397)||(5236559-5236665)
chr3 (291-397)||(51398773-51398879)
chr3 (292-397)||(7762226-7762330)
chr3 (349-397)||(25491071-25491119)
chr3 (291-330)||(4569911-4569950)
chr3 (306-397)||(39127521-39127612)
chr3 (291-397)||(40734457-40734563)
chr3 (291-397)||(44700581-44700687)
chr3 (252-397)||(46860394-46860539)
chr3 (325-397)||(1683469-1683541)
chr3 (294-397)||(22835105-22835208)
chr3 (198-396)||(54593571-54593768)
chr3 (291-397)||(1313908-1314014)
chr3 (291-330)||(9581242-9581281)
chr3 (291-330)||(9666637-9666676)
chr3 (291-330)||(29196557-29196596)
chr3 (354-397)||(29813085-29813128)
chr3 (291-330)||(44331504-44331543)
chr3 (291-394)||(8166563-8166667)
chr3 (291-329)||(29682318-29682356)
chr3 (291-397)||(23200241-23200345)
[»] chr7 (22 HSPs)
chr7 (291-397)||(47674046-47674152)
chr7 (280-397)||(1360256-1360372)
chr7 (291-397)||(1113616-1113722)
chr7 (291-397)||(14069936-14070042)
chr7 (291-397)||(14379964-14380070)
chr7 (291-397)||(27347776-27347882)
chr7 (291-397)||(30024835-30024941)
chr7 (291-397)||(48491538-48491644)
chr7 (291-396)||(4586120-4586225)
chr7 (291-397)||(23554999-23555105)
chr7 (291-397)||(43864203-43864309)
chr7 (291-397)||(18126603-18126709)
chr7 (291-397)||(31733072-31733178)
chr7 (291-397)||(48489390-48489496)
chr7 (291-397)||(36146510-36146617)
chr7 (291-330)||(4538710-4538749)
chr7 (291-330)||(24526067-24526106)
chr7 (291-330)||(31105563-31105602)
chr7 (354-396)||(43363578-43363620)
chr7 (291-367)||(3904751-3904826)
chr7 (198-316)||(4512573-4512692)
chr7 (309-397)||(26639297-26639385)
[»] chr1 (29 HSPs)
chr1 (291-397)||(49918309-49918415)
chr1 (291-397)||(25652045-25652151)
chr1 (291-397)||(10925182-10925288)
chr1 (291-397)||(28265657-28265763)
chr1 (291-397)||(37503657-37503763)
chr1 (198-397)||(11348564-11348763)
chr1 (291-397)||(13138079-13138183)
chr1 (198-397)||(29136113-29136312)
chr1 (301-397)||(3156834-3156930)
chr1 (291-397)||(834270-834376)
chr1 (310-397)||(12318626-12318713)
chr1 (291-397)||(28220329-28220435)
chr1 (291-397)||(46064877-46064983)
chr1 (198-397)||(193477-193676)
chr1 (291-397)||(31659197-31659303)
chr1 (252-397)||(19754416-19754560)
chr1 (291-330)||(197078-197117)
chr1 (291-330)||(1833481-1833520)
chr1 (291-330)||(3847291-3847330)
chr1 (310-397)||(9109523-9109610)
chr1 (291-330)||(15820266-15820305)
chr1 (291-330)||(50167345-50167384)
chr1 (293-330)||(28223591-28223628)
chr1 (347-396)||(33775924-33775973)
chr1 (357-397)||(3189355-3189395)
chr1 (357-397)||(3198172-3198212)
chr1 (357-397)||(3207011-3207051)
chr1 (357-397)||(15820332-15820372)
chr1 (325-397)||(22079309-22079381)
[»] chr6 (10 HSPs)
chr6 (252-392)||(25073489-25073628)
chr6 (291-397)||(9183134-9183240)
chr6 (252-397)||(5043549-5043692)
chr6 (198-397)||(21593532-21593729)
chr6 (301-397)||(5413497-5413592)
chr6 (291-397)||(4045382-4045488)
chr6 (198-320)||(5740970-5741092)
chr6 (354-397)||(2973042-2973085)
chr6 (291-330)||(28137578-28137617)
chr6 (291-323)||(16567165-16567197)
[»] chr8 (20 HSPs)
chr8 (291-396)||(3231900-3232005)
chr8 (310-397)||(11712104-11712192)
chr8 (310-397)||(41266946-41267034)
chr8 (291-397)||(15212745-15212851)
chr8 (291-397)||(27811237-27811343)
chr8 (310-397)||(33655408-33655494)
chr8 (291-397)||(43036382-43036488)
chr8 (291-397)||(42498153-42498259)
chr8 (354-397)||(4162519-4162562)
chr8 (291-373)||(8965818-8965900)
chr8 (252-397)||(44353714-44353858)
chr8 (301-389)||(7444929-7445017)
chr8 (311-397)||(7597592-7597679)
chr8 (291-330)||(4731617-4731656)
chr8 (291-330)||(5689230-5689269)
chr8 (334-397)||(11137027-11137090)
chr8 (354-397)||(12702737-12702780)
chr8 (291-330)||(41365017-41365056)
chr8 (291-330)||(41366784-41366823)
chr8 (313-397)||(29796425-29796510)
[»] chr2 (21 HSPs)
chr2 (289-397)||(30218148-30218256)
chr2 (291-397)||(24885620-24885726)
chr2 (291-397)||(5723359-5723463)
chr2 (291-397)||(11690460-11690566)
chr2 (291-397)||(29867828-29867934)
chr2 (291-397)||(33648129-33648236)
chr2 (291-397)||(34139874-34139980)
chr2 (291-397)||(42362311-42362417)
chr2 (339-397)||(42261589-42261647)
chr2 (291-397)||(4503235-4503341)
chr2 (347-396)||(41446154-41446203)
chr2 (295-367)||(7597145-7597217)
chr2 (291-396)||(17057473-17057578)
chr2 (291-396)||(17085456-17085561)
chr2 (291-396)||(36318113-36318218)
chr2 (291-330)||(723914-723953)
chr2 (354-397)||(6595109-6595152)
chr2 (291-330)||(14633996-14634035)
chr2 (291-330)||(17450550-17450589)
chr2 (291-330)||(36773521-36773560)
chr2 (291-323)||(11067264-11067296)
[»] scaffold0066 (1 HSPs)
scaffold0066 (291-397)||(20518-20624)
[»] scaffold0002 (1 HSPs)
scaffold0002 (339-397)||(490424-490482)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 10701136 - 10700753
Alignment:
Q  13 caaaggagggaaatttaagggaacttagaagctaagagttaagggtctttaggtgagatccaaaggttccaaatgcgatcttggagaacttaaaaagggg 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  10701136 caaaggagggaaatttaagggaacttagaagataagagttaagggtctttaggtgagatccaaaggttctaaatgtgatcttggagaacgtaaaaagggg 10701037  T
Q  113 aatcttgagaaagggtcggtaccttttggg-agagatttatggggttaagaaacacataaattagtagagagtcatttctaagcaacttgggaaaccaaa 211  Q
     |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  10701036 gatcttgagaaagggtttgtaccttttggggagagatttatggggttaagaaacacataaattagtagagagtcatttgtgagcaacttaggaaaccaaa 10700937  T
Q  212 cgtgaagatcctgaggaaataaaaggctaaggtttagtgacttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaa 311  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  10700936 cgtgaagatcctcaggaaataaaaggctaaggtttggtgacttttgggggctagattctaaaaatgggaaacaattaggaaacaccttgggtgcgtgaaa 10700837  T
Q  312 atcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatt 395  Q
    |||||||||| |||||||| ||  |||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  10700836 atcattgagtattttgttcatgaaaatagattggaaaaaaggtagaaattaggtttgttcttagagagcttgttgaagctaatt 10700753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 397
Target Start/End: Original strand, 316630 - 316827
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgaggaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaacac 296  Q
    ||||||| |||||| | ||| ||||| ||||||| ||||||||||| || ||   |||||||||| |||||| ||||  ||| |||||| | ||||| ||    
T  316630 cttgggagaccaaaagagaaaatcct-aggaaatcaaaggctaagggttggttctcttttgggggttagattttaaagttggaaaacaattgggaaaaac 316728  T
Q  297 cttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaattt 396  Q
     | ||||| |||||| |||||| || | |||||   ||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  316729 -tcgggtgagtgaaa-tcattgggtctcttgtttaggggaaaagattgagaaaaaggtagaaattaggtttgttcttggagagcttgttgaagctaattt 316826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 35616116 - 35616234
Alignment:
Q  278 ggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagag 377  Q
    |||||||| |||||||||||||||||| ||| |||||||||||| | ||||||  ||||| |||||||||||    |||||||||||||||||||| |||    
T  35616116 ggaaacaattaggaaacaccttgggtgagtg-aaatcattgagtctcttgttcacgggaagagattgagaaatgagtagaaattaggtttgttcttggag 35616214  T
Q  378 aacttgttgaagctaatttc 397  Q
    | || ||| ||| |||||||    
T  35616215 agctcgtttaagttaatttc 35616234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 13488162 - 13488268
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||| ||||||||| |||||| | || | |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  13488162 aaacaccttgggtgagtgaaaattattgagtgtcttgttcattggta-agattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 13488260  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  13488261 ctaatttc 13488268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 3325873 - 3325978
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagc 390  Q
    |||||||||||||| ||||||  ||||| || | |||||| | |||| | ||||| |||||| |||||||||| |||||||||  ||| |||||||||||    
T  3325873 aaacaccttgggtgagtgaaac-cattgggtatcttgttcttaggaagaaattgaaaaaaaggtagaaattagttttgttcttgaagagcttgttgaagc 3325971  T
Q  391 taatttc 397  Q
    |||||||    
T  3325972 taatttc 3325978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 391
Target Start/End: Original strand, 4160499 - 4160690
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgaggaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaacac 296  Q
    |||||||||||||| | ||||||||| ||| ||| ||||||||||| || ||   |||||||||| ||||||| | |  || ||||||| | | ||||||    
T  4160499 cttgggaaaccaaaagagaagatccttaggtaattaaaggctaagggttggttctcttttgggggttagattc-agagttgagaaacaatt-gtaaacac 4160596  T
Q  297 cttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagct 391  Q
     |||| || |||||| ||| ||| ||||||| || || ||  |||||  ||||| | |||||||||||||||||||| |||||||||||||||||    
T  4160597 attggttgagtgaaa-tcaatgaatgttttgctcatgagaggagatttggaaaatggtagaaattaggtttgttcttggagaacttgttgaagct 4160690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 8019464 - 8019558
Alignment:
Q  208 caaacgtgaagatcctgaggaaataaaaggctaaggtttagtgacttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggt 303  Q
    |||| ||||||||||| || |||| |||||||||||||  || | ||||||||| ||||||||| |  ||||||| || |||||||||||||||||    
T  8019464 caaaagtgaagatccttagaaaatcaaaggctaaggttg-gttatttttgggggttagattctatagttgggaaataattaggaaacaccttgggt 8019558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 8566155 - 8566049
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  |   ||||||||||||  | ||||| |||||||||||||| | || |||||| |||    
T  8566155 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgagaaaatgggtagaacttaggtttgttctttgtgagcttgtttaag 8566057  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  8566056 ctaatttc 8566049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 39468758 - 39468652
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||| ||| |||||||||||||||||| |||||| |  |   |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  39468758 aaacaccttgagtgagtgaaaatcattgagtgtcttgttcattagtg-agattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 39468660  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  39468659 ctaatttc 39468652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 42428639 - 42428533
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||| | || ||||| | |||||||||||||    
T  42428639 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattatggtttttctttgtgaacttgttgaag 42428541  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  42428540 ctaatttc 42428533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 10055006 - 10054919
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||| | |||||| | | || |||||||||||  | ||||||||| ||||||||||  |||  |||||||||||||||||    
T  10055006 aaatcattgagtctattgttcatagaaagagattgagaaatgggtagaaattatgtttgttcttgaagagtttgttgaagctaatttc 10054919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 28750864 - 28750825
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  28750864 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 28750825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 42926852 - 42926891
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  42926852 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 42926891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 394
Target Start/End: Original strand, 27015404 - 27015593
Alignment:
Q  204 aaaccaaacgtgaagatcctgag-gaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgg 301  Q
    |||||||| | ||||||||| || ||||| ||||||||||| || ||   |||||||||| ||||||||| |  |||||||||| | | ||||| |||||    
T  27015404 aaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctagagttgggaaacaatt-gtaaacatcttgg 27015502  T
Q  302 gtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaagctaat 394  Q
    | | ||||||||||| |||||||| ||   |||  |  ||||| ||||| || ||||||||||| |||||||| | ||||||||||||||||||    
T  27015503 gagagtgaaaatcat-gagtgtttggtcattggtga--gattgggaaaataggtagaaattagggttgttctttgtgaacttgttgaagctaat 27015593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 33831639 - 33831745
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| || ||| |  |   |||||| ||||||  | |||||||||||||||||||| | || |||||| ||    
T  33831639 aaacaccttgggtgagtgaaaatcattgagtgtcttattcatttg-tgagattg-gaaaaatgggtagaaattaggtttgttctttgtgagcttgtttaa 33831736  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  33831737 gctaatttc 33831745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 32636783 - 32636815
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgt 323  Q
    |||||||||||||| ||||||||||||||||||    
T  32636783 aaacaccttgggtgagtgaaaatcattgagtgt 32636815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 33089835 - 33089942
Alignment:
Q  289 ggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||  | |||||||||||||||||| |||||| |||||| ||||||||| |   |||||||||| |||||||||| |||| |||||||||    
T  33089835 ggaaacaccttggaagagtgaaaatcattgagtgtcttgttcatgggaagagattgagagatgaatagaaattatgtttgttcttggagagcttgttgaa 33089934  T
Q  389 gctaattt 396  Q
    ||||||||    
T  33089935 gctaattt 33089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 48143001 - 48143108
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga--tagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||| |  ||||||||||| |||||||| | ||||||||||||    
T  48143001 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaaaaaggtagaaattagggttgttctttgtgaacttgttgaa 48143099  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  48143100 gctaatttc 48143108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 397
Target Start/End: Complemental strand, 22882994 - 22882854
Alignment:
Q  257 gggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatag 356  Q
    ||||| ||||||||| || ||| |||||| |||| ||| | ||| |   |||||||||||||||||  |||||| ||| || ||||||| |||  ||||     
T  22882994 gggggttagattctagaattggaaaacaattaggtaacgctttgagaaagtgaaaatcattgagtgccttgttcatggaaagagattgaaaaatggataa 22882895  T
Q  357 aaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||||||| ||||  |||||||||||||||||    
T  22882894 aaattaggtttgttcttggagagtttgttgaagctaatttc 22882854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 397
Target Start/End: Complemental strand, 22934658 - 22934518
Alignment:
Q  257 gggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatag 356  Q
    ||||| ||||||||| || ||| |||||| |||| ||| | ||| |   |||||||||||||||||  |||||| ||| || ||||||| |||  ||||     
T  22934658 gggggttagattctagaattggaaaacaattaggtaacgctttgagaaagtgaaaatcattgagtgccttgttcatggaaagagattgaaaaatggataa 22934559  T
Q  357 aaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||||||| ||||  |||||||||||||||||    
T  22934558 aaattaggtttgttcttggagagtttgttgaagctaatttc 22934518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 34570623 - 34570517
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    ||||| |||||||| |||||||||||||||||| |||||| | ||   |||||| ||||| || ||||||||||| |||||||| | |||||||||||||    
T  34570623 aaacatcttgggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaataggtagaaattagggttgttctttgtgaacttgttgaag 34570525  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  34570524 ctaatttc 34570517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 397
Target Start/End: Original strand, 32091362 - 32091543
Alignment:
Q  215 gaagatcctgaggaaataaaaggctaaggtttagtgacttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatc 314  Q
    ||||||||| ||||||| |||||| |||  || ||   |||| ||||  ||||||||||  | |||||||| |  ||||||| ||||||| | |||| ||    
T  32091362 gaagatccttaggaaatcaaaggcaaagtgttggttcttttttggggtaagattctaaagtttggaaacaattgagaaacacattgggtgagcgaaa-tc 32091460  T
Q  315 attgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||| | |||||| |||||  |||||| ||||| | |||||||||||||||||||| ||||  |||||||| ||||||||    
T  32091461 attgagtctcttgttcatgggagaagattgggaaaatgctagaaattaggtttgttcttggagagtttgttgaaactaatttc 32091543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 21704027 - 21703947
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattagg-tttgttcttagagaacttgttgaag 389  Q
    |||||||| ||| | |||||| |||||| |||||||||||||| ||||||||||| |||||||||||| | ||||||||||    
T  21704027 aaatcattaagtctattgttcttgggaagagattgagaaaaaggtagaaattaggttttgttcttagaaagcttgttgaag 21703947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 5429638 - 5429744
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||| || ||||||||||| || ||||| | || ||||||||||    
T  5429638 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgagtagaaattagggttattcttcgtgagcttgttgaag 5429736  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  5429737 ctaatttc 5429744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 337
Target Start/End: Original strand, 33989733 - 33989867
Alignment:
Q  203 gaaaccaaacgtgaagatcctgaggaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgg 301  Q
    ||||||||| | ||||||||| ||| ||| ||||||||||| || ||   ||||||| || ||||||||| |  |||||||||||| | |||||||||||    
T  33989733 gaaaccaaaagagaagatccttaggtaatcaaaggctaaggatttgttctcttttggaggttagattctagagttgggaaacaact-gtaaacaccttgg 33989831  T
Q  302 gtgtgtgaaaatcattgagtgttttgttcgtgggaa 337  Q
     || || ||||| |||||||||||||||| ||||||    
T  33989832 ttgagtaaaaattattgagtgttttgttcatgggaa 33989867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 54200115 - 54200009
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||| ||||||| |||||||||||||||||| |||||| | ||   |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  54200115 aaacacattgggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 54200017  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  54200016 ctaatttc 54200009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 56178845 - 56178740
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    ||||||||||| || |||||||||||||||||| |||||| | ||   |||||| |||||||  ||||||||||| |||||||| | |||||||||||||    
T  56178845 aaacaccttgg-tgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaaagggtagaaattagggttgttctttgtgaacttgttgaag 56178748  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  56178747 ctaatttc 56178740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 5208051 - 5207946
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattagg-tttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||| ||||  |||||| | ||| | |||||  |||| | ||||||||||| ||||||||| | |||||||||||||    
T  5208051 aaacaccttgggtgagtgaaaatcatttagtgacttgttcattggagt-gattggaaaaagggtagaaattagggtttgttctttgtgaacttgttgaag 5207953  T
Q  390 ctaattt 396  Q
    |||||||    
T  5207952 ctaattt 5207946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 47038618 - 47038513
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagc 390  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   ||||||  |||  | ||||||||||| |||||||| | || |||||||||||    
T  47038618 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattggaaaatgggtagaaattagggttgttctttgtgagcttgttgaagc 47038520  T
Q  391 taatttc 397  Q
    |||||||    
T  47038519 taatttc 47038513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 397
Target Start/End: Complemental strand, 55085667 - 55085468
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgag-gaaataaaaggctaaggttt-agtgacttttgggggctagattctaaaaatgggaaacaactaggaaaca 295  Q
    |||| ||||||||| | ||||||||| || ||||| ||||||||||| || | |  | |||||||| ||||||||| |  | |||||||| | | |||||    
T  55085667 cttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttgattctcctttgggggttagattctagagttcggaaacaatt-gtaaaca 55085569  T
Q  296 ccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatt 395  Q
    ||||||||| |||||||||||||| ||| |||||| | ||   ||||||  ||| || ||||||||| | |||||||| | || ||||||||||||||||    
T  55085568 ccttgggtgagtgaaaatcattgactgtcttgttcattgg-tgagattggaaaataggtagaaattaaggttgttctttgtgagcttgttgaagctaatt 55085470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 36994483 - 36994589
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||| | |||||||| | || ||||||||||    
T  36994483 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattaaggttgttctttgtgagcttgttgaag 36994581  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  36994582 ctaatttc 36994589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 52095571 - 52095465
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | ||||||||  |||    
T  52095571 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgaacttgtcaaag 52095473  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  52095472 ctaatttc 52095465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 5871779 - 5871885
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||||  | |||||||||||||||||||| | || |||||| ||    
T  5871779 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattg-gaaaaatgggtagaaattaggtttgttctttgtgagcttgtttaa 5871876  T
Q  389 gctaatttc 397  Q
    || ||||||    
T  5871877 gcaaatttc 5871885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 396
Target Start/End: Original strand, 12073314 - 12073456
Alignment:
Q  252 cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa 351  Q
    |||||||||| ||||||||| |  |||||||||| | | |||||||||||| ||||||||||||| |||||| ||| |  | ||   |||||| |||||     
T  12073314 cttttgggggttagattctagagttgggaaacaatt-gtaaacaccttgggagtgtgaaaatcat-gagtgtcttgcttattggtg-agattgggaaaat 12073410  T
Q  352 ga-tagaaattaggtttgttcttagagaacttgttgaagctaattt 396  Q
    |  |||||||||||||||||||| | || |||||||||||||||||    
T  12073411 gggtagaaattaggtttgttctttgtgagcttgttgaagctaattt 12073456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 29056315 - 29056356
Alignment:
Q  289 ggaaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  29056315 ggaaacaccttgggtgagtaaaaatcattgagtgttttgttc 29056356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 397
Target Start/End: Original strand, 54882891 - 54883085
Alignment:
Q  203 gaaaccaaacgtgaagatcctgag-gaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttg 300  Q
    ||||||||| | ||||||||| || ||||| ||||||||||| || ||   |||||||||| ||||||||| |  |||||||||| | | ||||||||||    
T  54882891 gaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctagagttgggaaacaatt-gtaaacaccttg 54882989  T
Q  301 ggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    || | |||||||||| ||||||| |||||| | ||   |||||| |||||  | ||||||||||| ||||| || | || ||||||||||||||||||    
T  54882990 ggagagtgaaaatca-tgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttttttgtgagcttgttgaagctaatttc 54883085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 52467563 - 52467460
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  |   || ||| |||||  | |||||||||||||||||||| | || ||||||||||    
T  52467563 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgaggttgggaaaatgggtagaaattaggtttgttctttgtgagcttgttgaag 52467465  T
Q  390 ctaat 394  Q
    |||||    
T  52467464 ctaat 52467460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 379402 - 379445
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  379402 tagaaattaggtttgttctttgtgagcttgttgaagctaatttc 379445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 8665430 - 8665473
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||    
T  8665430 tagaaattagggttgttctttgagagcttgttgaagctaatttc 8665473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 9927604 - 9927561
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||| |||||||| | |||||||||||||||||||||    
T  9927604 tagaaattagggttgttctttgtgaacttgttgaagctaatttc 9927561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 12745645 - 12745606
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  12745645 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 12745606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 13009640 - 13009601
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  13009640 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 13009601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 26175845 - 26175806
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  26175845 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 26175806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 26364258 - 26364301
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||| |||||||| | |||||||||||||||||||||    
T  26364258 tagaaattagggttgttctttgtgaacttgttgaagctaatttc 26364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 48893851 - 48893812
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  48893851 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 48893812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 3913408 - 3913446
Alignment:
Q  292 aacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  3913408 aacaccttgggtgagtgaaaatcattgagtgtcttgttc 3913446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 33089735 - 33089797
Alignment:
Q  179 gagagtcatttctaagcaacttgggaaaccaaacgtgaagatcctgaggaaataaaaggctaa 241  Q
    ||||||||||| | |||||||||||| |||||| | ||||||||| || |||| |||||||||    
T  33089735 gagagtcatttgtgagcaacttgggagaccaaaagagaagatccttagaaaatcaaaggctaa 33089797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 33989867 - 33989909
Alignment:
Q  355 agaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  33989867 agaaactaggtttgttcttagagagtttgttgaagctaatttc 33989909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 34112793 - 34112882
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaaga--tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||  |||||| | |||||| ||||||  ||||| |  ||||||||| |||||||||  |||| ||||||||||||||||||    
T  34112793 aaatcattgagccttttgtacatgggaagagattggaaaaaaaaagtagaaattatgtttgttctaggagagcttgttgaagctaatttc 34112882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 38811397 - 38811292
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagc 390  Q
    |||||||||||||| |||||| ||||||||| | |||||| | | || |||||||||||  | || |||||| |||||||||| ||||  ||||||||      
T  38811397 aaacaccttgggtgagtgaaa-tcattgagtctcttgttcatagaaagagattgagaaatgggtacaaattaagtttgttcttggagagtttgttgaatt 38811299  T
Q  391 taatttc 397  Q
    |||||||    
T  38811298 taatttc 38811292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 5349932 - 5349973
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatt 395  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  5349932 tagaaattaggtttgttctttgtgaacttgtcgaagctaatt 5349973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 4587917 - 4587949
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgt 323  Q
    |||||||||||||| ||||||||||||||||||    
T  4587917 aaacaccttgggtgagtgaaaatcattgagtgt 4587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 37740650 - 37740690
Alignment:
Q  357 aaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||| |||||||| | |||||||||||||||||||||    
T  37740650 aaattagggttgttctttgtgaacttgttgaagctaatttc 37740690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 44968020 - 44967932
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattagg-tttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||  | |||||| |||||| |||||| ||||| | ||||||||||| |||| |||| |||| |||| |||||| ||||||    
T  44968020 aaatcattgagcctgttgttcttgggaagagattgggaaaatggtagaaattaggttttgctcttggagagcttgctgaagccaatttc 44967932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 51337023 - 51337055
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgt 323  Q
    |||||||||||||| ||||||||||||||||||    
T  51337023 aaacaccttgggtgagtgaaaatcattgagtgt 51337055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 392
Target Start/End: Original strand, 52065561 - 52065656
Alignment:
Q  296 ccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagcta 392  Q
    ||||||||| ||||||||||| |||| | ||| ||   |||| | |||| |||| || ||||||||||||| ||||||||||| ||| |||||||||    
T  52065561 ccttgggtgagtgaaaatcatcgagtctcttgatcaacggaagatattgggaaacaggtagaaattaggtt-gttcttagagagcttattgaagcta 52065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 53345191 - 53345282
Alignment:
Q  306 gtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaatt-aggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||||||||| |||||  | || | |||||||||||| |||||||||| |||||  ||||| | || ||||||||| ||||||||    
T  53345191 gtgaaaatcattgagtgtcttgtttatcgg-agagattgagaaaatgatagaaattaaggttgattctttgtgagcttgttgaaactaatttc 53345282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 3148190 - 3148094
Alignment:
Q  301 ggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||| |||||||| ||||||| ||||||| ||||||| |||||||||||  |||||||||||||||| |||||  ||| ||||||||||||||||||    
T  3148190 ggtgagtgaaaataattgagtcttttgtttgtgggaagagattgagaaatggatagaaattaggtttcttcttgaagagcttgttgaagctaatttc 3148094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 26323298 - 26323177
Alignment:
Q  276 tgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttag 375  Q
    |||||||||| | |||||||||||| ||| ||||| |||||| ||||| |||||| |||||  |||||||||||| | || |||||||||||||| ||      
T  26323298 tgggaaacaattgggaaacaccttgagtgagtgaacatcattaagtgtcttgttcatgggatgagattgagaaaagggtaaaaattaggtttgtttttga 26323199  T
Q  376 agaacttgttgaagctaatttc 397  Q
    |||  |||||||||||||||||    
T  26323198 agagtttgttgaagctaatttc 26323177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 35138916 - 35138809
Alignment:
Q  290 gaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    ||||||||||||| | |||||||||||||||||| |||||| ||| || |||||||||||  | ||||||||| |||||||||| | ||  |||||||||    
T  35138916 gaaacaccttgggagagtgaaaatcattgagtgtcttgttcatggaaagagattgagaaatgggtagaaattatgtttgttcttggtgagtttgttgaag 35138817  T
Q  390 ctaatttc 397  Q
     |||||||    
T  35138816 ttaatttc 35138809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 5236665 - 5236559
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  5236665 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 5236567  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  5236566 ctaatttc 5236559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 51398773 - 51398879
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    ||||||||||| || |||||||||||||||||| |||||| | | |  |||||| ||||||  | ||||||||||| |||||||||| ||||||||||||    
T  51398773 aaacaccttggatgagtgaaaatcattgagtgtcttgttcattg-atgagattg-gaaaaatgggtagaaattagggttgttcttagtgaacttgttgaa 51398870  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  51398871 gctaatttc 51398879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 397
Target Start/End: Original strand, 7762226 - 7762330
Alignment:
Q  292 aacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaagc 390  Q
    |||||||||| || |||||||||||||||||| || ||| | ||   ||||||||||||||  ||||||||||| |||||||| | ||||||||||||||    
T  7762226 aacaccttgg-tgagtgaaaatcattgagtgtcttattcattggtg-agattgagaaaaagggtagaaattagggttgttctttgtgaacttgttgaagc 7762323  T
Q  391 taatttc 397  Q
    |||||||    
T  7762324 taatttc 7762330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 25491119 - 25491071
Alignment:
Q  349 aaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  25491119 aaagatagaaattaggtttgttctttgagagcttgttgaagctgatttc 25491071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 4569911 - 4569950
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4569911 aaacaccttgggtgagtgaaaatcattgagtgttttgttc 4569950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 39127521 - 39127612
Alignment:
Q  306 gtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||||| || || ||| || ||| ||||||||||| |  || |||||| |||||||||| | || ||||||||||||||||||    
T  39127521 gtgaaaatcattgagcgtcttattcatgagaagagattgagaaataagtataaattatgtttgttcttggtgagcttgttgaagctaatttc 39127612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 40734457 - 40734563
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | || |||||||||     
T  40734457 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgagcttgttgaac 40734555  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  40734556 ctaatttc 40734563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 44700687 - 44700581
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | ||  |||||||||    
T  44700687 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgagtttgttgaag 44700589  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  44700588 ctaatttc 44700581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 397
Target Start/End: Original strand, 46860394 - 46860539
Alignment:
Q  252 cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaat-cattgagtgttttgttcgtgggaatagattgagaaaa 350  Q
    |||||||||| ||||||||| |  || ||||||| | | |||||||||||| | |||||||| || ||||||| |||||| | ||   ||||||||||||    
T  46860394 cttttgggggttagattctagagttgagaaacaatt-gtaaacaccttgggagagtgaaaattcaatgagtgtcttgttcattggtg-agattgagaaaa 46860491  T
Q  351 aga-tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
     |  |||||||||||||||||||| | || ||||||||||||||||||    
T  46860492 tgggtagaaattaggtttgttctttgtgagcttgttgaagctaatttc 46860539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 1683469 - 1683541
Alignment:
Q  325 ttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||| ||| ||||||||||||||| | ||||||||| ||| |||||| |||| ||| |||| |||||||||    
T  1683469 ttgttcatggaaatagattgagaaaatggtagaaattaagttcgttcttcgagagcttattgatgctaatttc 1683541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 22835208 - 22835105
Alignment:
Q  294 caccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaagcta 392  Q
    ||||||||||| |||||||||||||||||| |||||| |  |   |||||| |||||  | |||||||||||||||||||| | || |||||| ||||||    
T  22835208 caccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatgggtagaaattaggtttgttctttgtgagcttgtttaagcta 22835110  T
Q  393 atttc 397  Q
    |||||    
T  22835109 atttc 22835105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 396
Target Start/End: Original strand, 54593571 - 54593768
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgag-gaaataaaaggctaaggtttagtgacttttgggggctagattctaaaaatgggaaacaactaggaaacac 296  Q
    |||| |||||||||   ||||||||| || ||||| ||||||||||| ||  |  |||||||||| ||||||||| |  |||||||||| | | ||||||    
T  54593571 cttgtgaaaccaaaatagaagatccttagtgaaatcaaaggctaagggttgttctcttttgggggttagattctagagttgggaaacaatt-gtaaacac 54593669  T
Q  297 cttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaag-atagaaattaggtttgttcttagagaacttgttgaagctaatt 395  Q
    |||||| | |||||||||| ||||||| |||||| | ||   |||||| ||||| |   |||||||||| |||||||| | || ||||||||||||||||    
T  54593670 cttgggagagtgaaaatca-tgagtgtcttgttcattgg-tgagattgggaaaatgtgcagaaattagggttgttctttgtgagcttgttgaagctaatt 54593767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 1314014 - 1313908
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggttt-gttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||| | ||||||| | || ||| || ||| |||||||||||| | || |||||| |||| |||||| |||| |||||| |||    
T  1314014 aaacaccttgggtgagtgaaatt-attgagtctcttattcttgagaagagattgagaaaagggtaaaaattatgttttgttcttggagagcttgttaaag 1313916  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  1313915 ctaatttc 1313908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 9581242 - 9581281
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  9581242 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 9581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 9666676 - 9666637
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  9666676 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 9666637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 29196596 - 29196557
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  29196596 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 29196557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 29813085 - 29813128
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||| |||||||| | |||||||||||||||||||||    
T  29813085 tagaaattagggttgttctttgtgaacttgttgaagctaatttc 29813128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 44331504 - 44331543
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  44331504 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 44331543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 8166667 - 8166563
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttt--tgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||| ||||||| |||||||||||||||||| |  ||||| ||| || ||||||| |||    |||||||||||||||||||| ||||  ||||||||    
T  8166667 aaacacattgggtgggtgaaaatcattgagtgtgtcttgttcatgg-aagagattgataaatgagtagaaattaggtttgttcttggagagtttgttgaa 8166569  T
Q  389 gctaat 394  Q
    | ||||    
T  8166568 gttaat 8166563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 29682318 - 29682356
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgtt 329  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  29682318 aaacaccttgggtgagtgaaaatcattgagtgtcttgtt 29682356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 23200345 - 23200241
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa-gatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    ||||||||||| || |||||||||||||||||| |||||| |||    |||||| |||||| | ||||||||||  |||||||| | ||||||||  |||    
T  23200345 aaacaccttgg-tgagtgaaaatcattgagtgtcttgttcttgg--tgagattgggaaaaatggtagaaattagagttgttctttgtgaacttgtcaaag 23200249  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  23200248 ctaatttc 23200241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 47674152 - 47674046
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||||||||| |  ||||||||||| |||||||| | |||||||||||||    
T  47674152 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgagaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 47674054  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  47674053 ctaatttc 47674046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 397
Target Start/End: Complemental strand, 1360372 - 1360256
Alignment:
Q  280 aaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaa 379  Q
    |||||| | ||||||||||| |||| |||||| ||||||||| | |||||| ||| |  |||||| ||||||| ||||||||||||||  |||| |||||    
T  1360372 aaacaattgggaaacacctttggtgagtgaaa-tcattgagtctcttgttcatggaatgagattgggaaaaaggtagaaattaggttttgtcttggagaa 1360274  T
Q  380 cttgttgaagctaatttc 397  Q
    ||||||||||| ||||||    
T  1360273 cttgttgaagcgaatttc 1360256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 1113616 - 1113722
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaag-atagaaattaggtttgttcttagagaacttgttgaag 389  Q
    ||||| |||||||| |||||||||||||||||| |||||| |  |   |||||||||||| | |||||||||||| |||||||| | || ||||||||||    
T  1113616 aaacaacttgggtgagtgaaaatcattgagtgtcttgttcatttgtg-agattgagaaaatggatagaaattagggttgttctttgtgagcttgttgaag 1113714  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  1113715 ctaatttc 1113722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 14070042 - 14069936
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa-gatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||| | ||||||||||| |||||||| | ||||||||  |||    
T  14070042 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaaagggtagaaattagggttgttctttgtgaacttgtcaaag 14069944  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  14069943 ctaatttc 14069936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 14380070 - 14379964
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa-gatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||| | ||||||||||| |||||||| | ||||||||  |||    
T  14380070 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaaagggtagaaattagggttgttctttgtgaacttgtcaaag 14379972  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  14379971 ctaatttc 14379964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 27347776 - 27347882
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||| ||||||| |||||||||||||||||| |||||| | ||   |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  27347776 aaacacattgggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaatgggtagaaattaggattgttctttgtgaacttgttgaag 27347874  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  27347875 ctaatttc 27347882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 30024941 - 30024835
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   ||||||||||||  | ||||||||||| |||||| | | || ||||||||||    
T  30024941 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgagaaaatgggtagaaattagggttgttcattgtgagcttgttgaag 30024843  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  30024842 ctaatttc 30024835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 48491538 - 48491644
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||| ||||||| |||||||||||||||||| |||||| | ||   |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  48491538 aaacactttgggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 48491636  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  48491637 ctaatttc 48491644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 396
Target Start/End: Original strand, 4586120 - 4586225
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| ||| |||||||||||||| |||||| | ||   |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  4586120 aaacaccttgggtgagtgtaaatcattgagtgtcttgttcattggtg-agattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 4586218  T
Q  390 ctaattt 396  Q
    |||||||    
T  4586219 ctaattt 4586225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 23554999 - 23555105
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    ||||||||||| || |||||||||||||||||| |||||| | ||   |||||| ||||||  | ||||||||||| |||||||| | ||||||||||||    
T  23554999 aaacaccttgg-tgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaaaatggtagaaattagggttgttctttgtgaacttgttgaa 23555096  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  23555097 gctaatttc 23555105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 43864203 - 43864309
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa--agatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||   | ||||||||||| |||||||| | ||||||||||||    
T  43864203 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattg-gaaaagtgggtagaaattagggttgttctttgtgaacttgttgaa 43864300  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  43864301 gctaatttc 43864309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 18126603 - 18126709
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaag-atagaaattaggtttgttcttagagaacttgttgaag 389  Q
    ||||| |||||||| ||||||||||||||||||||||||| | ||   ||||||  |||| |  ||||||||||| |||||||| | ||||||||| |||    
T  18126603 aaacaacttgggtgagtgaaaatcattgagtgttttgttcattgg-tgagattggaaaaatgtgtagaaattagggttgttctttgtgaacttgttcaag 18126701  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  18126702 ctaatttc 18126709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 31733178 - 31733072
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   ||| ||||||||  | ||||||||||| |||||||| | || |||| |||||    
T  31733178 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagactgagaaaatgggtagaaattagggttgttctttgtgagcttggtgaag 31733080  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  31733079 ctaatttc 31733072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 48489390 - 48489496
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||| | ||| |||||| | ||   |||||| ||||| |  ||||||||||| |||||||| || ||||||||||||    
T  48489390 aaacaccttgggtgagtgaaaatcattaaatgtcttgttcattggtg-agattgggaaaatgggtagaaattagggttgttctttgaaaacttgttgaag 48489488  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  48489489 ctaatttc 48489496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 36146617 - 36146510
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattag-gtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | |||||||||| ||||||| || | || |||||||||    
T  36146617 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagagtttgttatttgtgagcttgttgaa 36146519  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  36146518 gctaatttc 36146510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 4538749 - 4538710
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  4538749 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 4538710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 24526106 - 24526067
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  24526106 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 24526067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 31105602 - 31105563
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  31105602 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 31105563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 43363620 - 43363578
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaattt 396  Q
    |||||||||||||||||||| |||| ||||||||| |||||||    
T  43363620 tagaaattaggtttgttcttggagagcttgttgaaactaattt 43363578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 3904826 - 3904751
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggttt 367  Q
    |||||||||||| | |||||| ||||||||| | |||||| | |||| |||||| ||||| | ||||||||||||||    
T  3904826 aaacaccttgggcgagtgaaa-tcattgagtctcttgttcttaggaagagattgggaaaatggtagaaattaggttt 3904751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 4512692 - 4512573
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgag-gaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaaca 295  Q
    |||| ||||||||| | ||||||||| || ||||| ||||||||||| |||||   |||||||||| || |||||| |  |||||||||| | | |||||    
T  4512692 cttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttagttctcttttgggggttatattctagagttgggaaacaatt-gtaaaca 4512594  T
Q  296 ccttgggtgtgtgaaaatcat 316  Q
    ||||||| | |||||||||||    
T  4512593 ccttgggagagtgaaaatcat 4512573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 397
Target Start/End: Original strand, 26639297 - 26639385
Alignment:
Q  309 aaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||| | || ||  |||||| |||||| ||||| | |||||||||||| ||||||| ||||  ||||||| | |||||||    
T  26639297 aaaatcattgagtctcttctttttgggaagagattgtgaaaatggtagaaattaggtatgttcttggagagtttgttgatgttaatttc 26639385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 49918309 - 49918415
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   ||||||||||||  | ||||||||||| |||||||| | |||||||||||||    
T  49918309 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgagaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 49918407  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  49918408 ctaatttc 49918415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 25652045 - 25652151
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagc 390  Q
    |||||||||  |||||||||||||||||||| |||||||| || ||| | |||||||||  | ||||||||| || |||| || ||||  ||||||||||    
T  25652045 aaacaccttaagtgtgtgaaaatcattgagtattttgttcatgagaaaatattgagaaattggtagaaattaagtgtgttatttgagagtttgttgaagc 25652144  T
Q  391 taatttc 397  Q
    |||||||    
T  25652145 taatttc 25652151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 10925182 - 10925288
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   ||||||| ||||  ||||||||||| | |||||||| | || ||||||||||    
T  10925182 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgaaaaaatggatagaaattatggttgttctttgtgagcttgttgaag 10925280  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  10925281 ctaatttc 10925288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 28265763 - 28265657
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||| || ||||||||||| |||||| | | || ||||||||||    
T  28265763 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-cgagattgggaaaataggtagaaattagggttgttcattgtgagcttgttgaag 28265665  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  28265664 ctaatttc 28265657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 37503763 - 37503657
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | || |||||||| |||||||| | |||||||||||||    
T  37503763 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtaaaaattagggttgttctttgtgaacttgttgaag 37503665  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  37503664 ctaatttc 37503657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 397
Target Start/End: Original strand, 11348564 - 11348763
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgag-gaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaaca 295  Q
    |||| ||||||||| | ||||||||| || ||||| ||||||||||| || ||   |||||||||| ||||||||| |  |||||||||| | | |||||    
T  11348564 cttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctagagttgggaaacaatt-gtaaaca 11348662  T
Q  296 ccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaagctaat 394  Q
    ||||||| | |||||||||| ||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | || |||||||||||||||    
T  11348663 ccttgggagagtgaaaatca-tgagtgtcttgttcattgg-tgagattgggaaaattggtagaaattagggttgttctttgtgagcttgttgaagctaat 11348760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 13138183 - 13138079
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagc 390  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   ||||||| |||  ||||||||||||| | |||||| | || |||||||||||    
T  13138183 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgaaaaatggatagaaattagg-tcgttctttgtgagcttgttgaagc 13138086  T
Q  391 taatttc 397  Q
    |||||||    
T  13138085 taatttc 13138079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 397
Target Start/End: Original strand, 29136113 - 29136312
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgag-gaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaaca 295  Q
    |||| ||||||||| | ||||||||| || ||||| ||||||||||| |||||   |||||||||| ||||||||| |  || ||||||| | | |||||    
T  29136113 cttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttagttctcttttgggggttagattctagagttgtgaaacaatt-gtaaaca 29136211  T
Q  296 ccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaagctaat 394  Q
    ||||||| | |||||||||| ||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | || |||||||||||||||    
T  29136212 ccttgggagagtgaaaatca-tgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgagcttgttgaagctaat 29136309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 397
Target Start/End: Original strand, 3156834 - 3156930
Alignment:
Q  301 ggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||| |||||||||||||||||| |||||| | ||   |||||||||||| |  ||||||||||| |||||||| | |||||||||||||||||||||    
T  3156834 ggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgagaaaatgggtagaaattagggttgttctttgtgaacttgttgaagctaatttc 3156930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 834376 - 834270
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  |   |||||| |||||  ||||||||||||| |||||||| | || |||||| |||    
T  834376 aaacaccttgggtgcgtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatggatagaaattagggttgttctttgtgagcttgtttaag 834278  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  834277 ctaatttc 834270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 12318713 - 12318626
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||| | |||||| |||| | |||||  ||||  | |||||||||||||||||| | |||| ||||||||||||||||||    
T  12318713 aaatcattgagtttcttgttcatgggtagagatttggaaatgggtagaaattaggtttgttcatggagagcttgttgaagctaatttc 12318626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 28220435 - 28220329
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| || ||| | ||   |||||  ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  28220435 aaacaccttgggtgagtgaaaatcattgagtgtcttattcattggtg-agattcggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 28220337  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  28220336 ctaatttc 28220329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 46064877 - 46064983
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  |   |||||| |||||  |||| ||||||||||||||||| | || || |||||||    
T  46064877 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatggataaaaattaggtttgttctttgtgagctcgttgaag 46064975  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  46064976 ctaatttc 46064983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 397
Target Start/End: Original strand, 193477 - 193676
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgag-gaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaaca 295  Q
    |||| ||||||||| | ||||||||| || ||||| ||||||||||| || ||   |||||||||| ||||||||| |  |||||||||| | | |||||    
T  193477 cttgtgaaaccaaaagagaagatccttagtgaaatcaaaggctaagggttggttctcttttgggggttagattctagagttgggaaacaatt-gtaaaca 193575  T
Q  296 ccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaagctaat 394  Q
    ||||||| | |||||||||| ||||||| |||||| | ||   ||||||||||||  | ||||||||||| ||||||||    | |||||||||||||||    
T  193576 ccttgggagggtgaaaatca-tgagtgtcttgttcattgg-tgagattgagaaaatgggtagaaattagggttgttctttattagcttgttgaagctaat 193673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 31659197 - 31659303
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||||  | |||||||||||  ||||||| | || |||||||||    
T  31659197 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattg-gaaaaatgggtagaaattagggctgttctttgtgagcttgttgaa 31659294  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  31659295 gctaatttc 31659303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 397
Target Start/End: Original strand, 19754416 - 19754560
Alignment:
Q  252 cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa 351  Q
    |||||||||| ||||||||| |  |||||||||  | | |||||||||| | | ||||||||||| |||||| |||||| | ||   |||||||||||||    
T  19754416 cttttgggggttagattctagagttgggaaacat-tcgtaaacaccttgagagagtgaaaatcat-gagtgtcttgttcattggtg-agattgagaaaaa 19754512  T
Q  352 --gatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
      | ||||||||||| |||||||| | || ||||||||||||||||||    
T  19754513 tgggtagaaattagggttgttctttgtgagcttgttgaagctaatttc 19754560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 197117 - 197078
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  197117 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 197078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 1833481 - 1833520
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  1833481 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 1833520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 3847330 - 3847291
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  3847330 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 3847291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 9109610 - 9109523
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||| |||||||| |||||| ||| |  |||||||||||| |  |||||||| |||| | ||| ||||||||||||||| |||||||    
T  9109610 aaatccttgagtgtcttgttcatggtaggagattgagaaaatggaagaaattaagtttttacttggagaacttgttgaagttaatttc 9109523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 15820266 - 15820305
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  15820266 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 15820305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 50167384 - 50167345
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  50167384 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 50167345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 28223628 - 28223591
Alignment:
Q  293 acaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  28223628 acaccttgggtgagtgaaaatcattgagtgtcttgttc 28223591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 33775924 - 33775973
Alignment:
Q  347 aaaaagatagaaattaggtttgttcttagagaacttgttgaagctaattt 396  Q
    |||| ||||||||||||| ||| |||| |||||||| |||||||||||||    
T  33775924 aaaatgatagaaattaggattgctcttggagaacttcttgaagctaattt 33775973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 3189355 - 3189395
Alignment:
Q  357 aaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||| |||||||| | |||||||||||||||||||||    
T  3189355 aaattagggttgttctttgtgaacttgttgaagctaatttc 3189395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 3198172 - 3198212
Alignment:
Q  357 aaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||| |||||||| | |||||||||||||||||||||    
T  3198172 aaattagggttgttctttgtgaacttgttgaagctaatttc 3198212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 3207011 - 3207051
Alignment:
Q  357 aaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||| |||||||| | |||||||||||||||||||||    
T  3207011 aaattagggttgttctttgtgaacttgttgaagctaatttc 3207051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 15820332 - 15820372
Alignment:
Q  357 aaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  15820332 aaattaggtttgttctttgtgagcttgttgaagctaatttc 15820372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 22079309 - 22079381
Alignment:
Q  325 ttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||| |||||| ||||||  |||| | ||||||||| |||||||||| | || |||||| |||||||||||    
T  22079309 ttgttcatgggaagagattggaaaaatggtagaaattatgtttgttctttgtgagcttgttaaagctaatttc 22079381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 392
Target Start/End: Original strand, 25073489 - 25073628
Alignment:
Q  252 cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa 351  Q
    |||||||||| ||||||||| |  |||||||||| | ||||||| |||||||| |||||| ||||||||| | |||||| |||||  ||||||| ||||     
T  25073489 cttttgggggttagattctagagttgggaaacaattgggaaacatcttgggtgagtgaaa-tcattgagtatcttgttcatgggaggagattgaaaaaat 25073587  T
Q  352 gatagaaattaggtttgttcttagagaacttgttgaagcta 392  Q
    | |||||||||| ||| ||||| | || |||||| ||||||    
T  25073588 ggtagaaattagatttattcttcgtgagcttgttaaagcta 25073628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 9183240 - 9183134
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   ||||||||||||  | ||||||||||| |||||||| | ||| |||||||||    
T  9183240 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgagaaaatgggtagaaattagggttgttctttgtgaatttgttgaag 9183142  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  9183141 ctaatttc 9183134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 397
Target Start/End: Original strand, 5043549 - 5043692
Alignment:
Q  252 cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa 351  Q
    |||||||||| ||||||||| |  |||||||||| | | |||||||||| | | ||||||||||| |||||| |||||| |  |   ||||||||||||     
T  5043549 cttttgggggttagattctagagttgggaaacaatt-gtaaacaccttgtgagagtgaaaatcat-gagtgtcttgttcattcgtg-agattgagaaaat 5043645  T
Q  352 ga-tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    || |||||||||||||||||||| | || ||||||||||||||||||    
T  5043646 gagtagaaattaggtttgttctttgtgagcttgttgaagctaatttc 5043692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 397
Target Start/End: Original strand, 21593532 - 21593729
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgaggaaataaaaggctaaggtttagtga-cttttgggggctagattctaaaaatgggaaacaactaggaaacac 296  Q
    |||| ||||||||| | ||||||||| ||||||| |||| |||||| || ||   |||||||||| ||||||||| |  |||||||||| | | ||||||    
T  21593532 cttgtgaaaccaaaagagaagatccttaggaaatcaaag-ctaagggttggttctcttttgggggttagattctagagttgggaaacaatt-gtaaacac 21593629  T
Q  297 cttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaagctaatt 395  Q
    |||||| | |||||||||| ||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | || ||||||||||||||||    
T  21593630 cttgggagagtgaaaatca-tgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgagcttgttgaagctaatt 21593727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 5413592 - 5413497
Alignment:
Q  301 ggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||| |||||||||||||||||| |||||| | ||   |||||| ||||||| ||||||||||| |||||||| | ||||||||  |||||||||||    
T  5413592 ggtgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaaaggtagaaattagggttgttctttgcgaacttgtcaaagctaatttc 5413497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 4045382 - 4045488
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaatta-ggtttgttcttagagaacttgttgaag 389  Q
    |||||||| ||||| |||||||||||||||||| |||||  | || | |||||| ||||| | ||||||||| |||||||||||   || ||||||||||    
T  4045382 aaacacctagggtgagtgaaaatcattgagtgtcttgtttattgg-agagattgggaaaatggtagaaattagggtttgttctttatgagcttgttgaag 4045480  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  4045481 ctaatttc 4045488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 320
Target Start/End: Complemental strand, 5741092 - 5740970
Alignment:
Q  198 cttgggaaaccaaacgtgaagatcctgaggaaataaaaggctaaggtttagtgacttttg-ggggctagattctaaaaatgggaaacaactaggaaacac 296  Q
    |||| ||||| ||| ||||||||||| || |||| ||||||||||| || || ||||||| |||| |||||||||||  ||| |||||| | | ||||||    
T  5741092 cttgagaaacaaaaagtgaagatccttagtaaatcaaaggctaagggttggttacttttggggggttagattctaaagttggaaaacaattggaaaacac 5740993  T
Q  297 cttgggtgtgtgaaaatcattgag 320  Q
    ||| |||| ||| |||||||||||    
T  5740992 cttcggtgagtg-aaatcattgag 5740970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 2973085 - 2973042
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  2973085 tagaaattaggtttgttctttgtgagcttgttgaagctaatttc 2973042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 28137617 - 28137578
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  28137617 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 28137578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 16567165 - 16567197
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgt 323  Q
    |||||||||||||| ||||||||||||||||||    
T  16567165 aaacaccttgggtgagtgaaaatcattgagtgt 16567197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 3232005 - 3231900
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattagg-tttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||  ||||||||| | |||||| | |||| |||||||||||||  ||||||||||| ||||||||| | || ||||||||||    
T  3232005 aaacaccttgggtgggtgaat-tcattgagtctcttgttcttaggaagagattgagaaaaatgtagaaattaggctttgttcttcgtgagcttgttgaag 3231907  T
Q  390 ctaattt 396  Q
    |||||||    
T  3231906 ctaattt 3231900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 11712192 - 11712104
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattagg-tttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||| |||||||| | |||| ||||||||||||  ||| |||||||| ||||||| | |||| ||||||||||||||||||    
T  11712192 aaatcattgagtcttttgttctttggaagagattgagaaaataatataaattaggttttgttccttgagagcttgttgaagctaatttc 11712104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 41266946 - 41267034
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattagg-tttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||| | |||||| | |||| || ||||||||| | ||||||||||| |||||||||||||||||||||||  ||||||||    
T  41266946 aaatcattgagtctcttgttcttaggaagagtttgagaaaatggtagaaattaggttttgttcttagagaacttgttgagactaatttc 41267034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 15212745 - 15212851
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||| ||| |||||| | ||   |||||| ||||| |  ||||||||||| |||||||| | |||||||||||||    
T  15212745 aaacaccttgggtgagtgaaaatcattgaatgtcttgttcattggtg-agattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaag 15212843  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  15212844 ctaatttc 15212851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 27811237 - 27811343
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | || ||||||||||    
T  27811237 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgagcttgttgaag 27811335  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  27811336 ctaatttc 27811343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 33655494 - 33655408
Alignment:
Q  310 aaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||||||||||||| |||||| ||| || | ||| ||||| ||||||||||||| ||||||||||||||  ||||||||||| |||||    
T  33655494 aaatcattgagtgtcttgttcatgg-aagatattaagaaatagatagaaattagatttgttcttagagagtttgttgaagctgatttc 33655408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 43036382 - 43036488
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | ||||||||||||     
T  43036382 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgaacttgttgaaa 43036480  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  43036481 ctaatttc 43036488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 42498153 - 42498259
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga--tagaaattaggtttgttcttagagaacttgttgaa 388  Q
    ||||||||||| || |||||||||||||||||| |||||| | ||   |||||| |||||| |  ||||||||||| |||||||| | ||||||||||||    
T  42498153 aaacaccttgg-tgagtgaaaatcattgagtgtcttgttcattggtg-agattgggaaaaaaaggtagaaattagggttgttctttgtgaacttgttgaa 42498250  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  42498251 gctaatttc 42498259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 4162519 - 4162562
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||| |||||||||||||| |||||||||||||||||||||||    
T  4162519 tagaagttaggtttgttctttgagaacttgttgaagctaatttc 4162562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 8965900 - 8965818
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaatta-ggtttgttctt 373  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||||| ||||||||| |||||||||||    
T  8965900 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaaaggtagaaattagggtttgttctt 8965818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 397
Target Start/End: Original strand, 44353714 - 44353858
Alignment:
Q  252 cttttgggggctagattctaaaaatgggaaacaactaggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa 351  Q
    |||||||||| ||||||||| |  |||||||||| | | |||||| ||||||| || ||||||||||||| | |||||| |  |   |||||| |||||     
T  44353714 cttttgggggttagattctagagttgggaaacaatt-gtaaacacattgggtgagtaaaaatcattgagtatcttgttcatttgtg-agattgggaaaat 44353811  T
Q  352 ga-tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |  ||||||||||| |||||||| | |||||||||||||||||||||    
T  44353812 gggtagaaattagggttgttctttgtgaacttgttgaagctaatttc 44353858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 7445017 - 7444929
Alignment:
Q  301 ggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||| ||||||||| |||||| | |||||| |||||| |||||||||||  | |||||||||| |||||||| | | | ||||||||||    
T  7445017 ggtgagtgaaaatctttgagtctcttgttcatgggaagagattgagaaattggtagaaattagatttgttctaatatagcttgttgaag 7444929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 7597592 - 7597679
Alignment:
Q  311 aatcattgagtgttttgttcgtgggaatagattgagaaaaagatag-aaattaggttt-gttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||| |||||||| |||||| |||||| |||||||| |  |||| |||||| |||||| |||| ||||||||||||||||||    
T  7597592 aatcattgagtcttttgttcttgggaagagattg-gaaaaagagaataaatcaggttttgttcttggagagcttgttgaagctaatttc 7597679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 4731617 - 4731656
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  4731617 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 4731656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 5689230 - 5689269
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  5689230 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 5689269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 11137027 - 11137090
Alignment:
Q  334 ggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    |||| |||||||||||| | ||||||||| || ||| |||  ||||||||||||||||||||||    
T  11137027 ggaagagattgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttc 11137090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 12702780 - 12702737
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||| |||||||| | |||||||||||||||||||||    
T  12702780 tagaaattagggttgttctttgtgaacttgttgaagctaatttc 12702737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 41365056 - 41365017
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  41365056 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 41365017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 41366823 - 41366784
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  41366823 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 41366784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 397
Target Start/End: Complemental strand, 29796510 - 29796425
Alignment:
Q  313 tcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaatta-ggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||| | |||||| || ||| |||||| |||||   ||||||| | ||||||||||| ||||||||||||||||| |||||    
T  29796510 tcattgagtctcttgttcttgagaagagattgggaaaagagtagaaatcaaggtttgttcttggagaacttgttgaagctgatttc 29796425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 30218256 - 30218148
Alignment:
Q  289 ggaaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    ||||||||||||   | ||| |||||||||||||| |||||| ||| |  |||||||||||  | ||||| |||||||||||||| |||| ||| |||||    
T  30218256 ggaaacaccttgacagagtggaaatcattgagtgtcttgttcatggaaggagattgagaaatgggtagaagttaggtttgttcttggagagcttattgaa 30218157  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  30218156 gctaatttc 30218148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 24885620 - 24885726
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaaga-tagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  | | | |||| ||||| || |||||||||||||||||||| | || |||||| |||    
T  24885620 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttgta-aaattgggaaaatgagtagaaattaggtttgttctttgtgagcttgtttaag 24885718  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  24885719 ctaatttc 24885726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 5723463 - 5723359
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagc 390  Q
    ||||||||||| || |||||||||||||||||| |||||| | ||   |||||||||||| | ||||||||||| |||||||| | ||||||||  ||||    
T  5723463 aaacaccttgg-tgagtgaaaatcattgagtgtcttgttcattggtg-agattgagaaaagggtagaaattaggcttgttctttgtgaacttgtcaaagc 5723366  T
Q  391 taatttc 397  Q
    |||||||    
T  5723365 taatttc 5723359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 11690460 - 11690566
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  |   |||||| |||||  | |||||||||||||||||||| | || |||||| |||    
T  11690460 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatgggtagaaattaggtttgttctttgtgagcttgtttaag 11690558  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  11690559 ctaatttc 11690566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 29867828 - 29867934
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| |||||  | ||||||||||| |||||||| | ||||||||  |||    
T  29867828 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattgggaaaatgggtagaaattagggttgttctttgtgaacttgtcaaag 29867926  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  29867927 ctaatttc 29867934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 33648129 - 33648236
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattagg-tttgttcttagagaacttgttgaag 389  Q
    ||||| |||||| | |||||||| ||||||||| |||| | || ||  |||||||||||| | || |||||||| ||||||||| | || ||||||||||    
T  33648129 aaacatcttgggagagtgaaaataattgagtgtcttgtacatgagaggagattgagaaaatggtaaaaattagggtttgttctttgtgagcttgttgaag 33648228  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  33648229 ctaatttc 33648236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 34139980 - 34139874
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  |   ||||||||||||  | ||||||||||| |||||||| | || |||||| |||    
T  34139980 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgagaaaatgggtagaaattagggttgttctttgtgagcttgtttaag 34139882  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  34139881 ctaatttc 34139874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 42362311 - 42362417
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaa-agatagaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||||| |||||| |  |   |||||| |||||  | |||||||||||||||||||| | || |||||| |||    
T  42362311 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatgggtagaaattaggtttgttctttgtgagcttgtttaag 42362409  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  42362410 ctaatttc 42362417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 42261647 - 42261589
Alignment:
Q  339 agattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||   ||||||||| |||||||||| |||| ||||||||||||||||||    
T  42261647 agattgagaaaatcgtagaaattaagtttgttcttggagagcttgttgaagctaatttc 42261589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 4503341 - 4503235
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    ||||||||||| || |||||||||||||||||| |||||| | |||  |||||| ||||||  | ||||||||||| |||||||| | ||||||||  ||    
T  4503341 aaacaccttgg-tgagtgaaaatcattgagtgtcttgttcattggag-agattgggaaaaaatggtagaaattagggttgttctttgtgaacttgtcaaa 4503244  T
Q  389 gctaatttc 397  Q
    |||||||||    
T  4503243 gctaatttc 4503235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 41446154 - 41446203
Alignment:
Q  347 aaaaagatagaaattaggtttgttcttagagaacttgttgaagctaattt 396  Q
    |||||| ||||||||| |||||||||| |||| |||||||||||||||||    
T  41446154 aaaaaggtagaaattatgtttgttctttgagagcttgttgaagctaattt 41446203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 7597217 - 7597145
Alignment:
Q  295 accttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagatagaaattaggttt 367  Q
    ||||| |||| |||||||||| | ||||| |||||| |||||| |||||||||||   |||||||||||||||    
T  7597217 accttaggtgagtgaaaatcactcagtgtcttgttcatgggaagagattgagaaatgaatagaaattaggttt 7597145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 17057578 - 17057473
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||||  | ||||||||||| |||||||| |  | |||||||||    
T  17057578 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattg-gaaaaatgggtagaaattagggttgttctttgcaagcttgttgaa 17057481  T
Q  389 gctaattt 396  Q
    ||||||||    
T  17057480 gctaattt 17057473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 17085561 - 17085456
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||||  | ||||||||||| |||||||| |  | |||||||||    
T  17085561 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattg-gaaaaatgggtagaaattagggttgttctttgcaagcttgttgaa 17085464  T
Q  389 gctaattt 396  Q
    ||||||||    
T  17085463 gctaattt 17085456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 36318218 - 36318113
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaa--gatagaaattaggtttgttcttagagaacttgttgaa 388  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||   |||||| ||||||  | ||||||||||| |||||||| | || |||||||||    
T  36318218 aaacaccttgggtgagtgaaaatcattgagtgtcttgttcattgg-tgagattg-gaaaaatgggtagaaattagggttgttctttgtgagcttgttgaa 36318121  T
Q  389 gctaattt 396  Q
     |||||||    
T  36318120 actaattt 36318113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 723953 - 723914
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  723953 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 723914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 6595152 - 6595109
Alignment:
Q  354 tagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||| |||||||| | |||||||||||||||||||||    
T  6595152 tagaaattagggttgttctttgtgaacttgttgaagctaatttc 6595109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 14634035 - 14633996
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  14634035 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 14633996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 17450550 - 17450589
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  17450550 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 17450589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 36773521 - 36773560
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttc 330  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  36773521 aaacaccttgggtgagtgaaaatcattgagtgtcttgttc 36773560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 11067264 - 11067296
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgt 323  Q
    |||||||||||||| ||||||||||||||||||    
T  11067264 aaacaccttgggtgagtgaaaatcattgagtgt 11067296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 20624 - 20518
Alignment:
Q  291 aaacaccttgggtgtgtgaaaatcattgagtgttttgttcgtgggaatagattgagaaaaagat-agaaattaggtttgttcttagagaacttgttgaag 389  Q
    |||||||||||||| |||||||||||||||| | || ||| | ||   |||||| ||||| ||  |||||||||||||||| || | |||||||||||||    
T  20624 aaacaccttgggtgagtgaaaatcattgagtttattattcattggtg-agattgggaaaatgagcagaaattaggtttgttttttgtgaacttgttgaag 20526  T
Q  390 ctaatttc 397  Q
    ||||||||    
T  20525 ctaatttc 20518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 490482 - 490424
Alignment:
Q  339 agattgagaaaaagatagaaattaggtttgttcttagagaacttgttgaagctaatttc 397  Q
    ||||||||||||   ||||||||| |||||||||| |||| ||||||||||||||||||    
T  490482 agattgagaaaatcgtagaaattaagtttgttcttggagagcttgttgaagctaatttc 490424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University