View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_high_23 (Length: 365)
Name: NF11894_high_23
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 38751881 - 38752221
Alignment:
| Q |
9 |
agaagcagagaaatcgggaagaaattgagaacacatgttggaattttccatctggaaccaactttgaagatcttgagggagaatattagtaggttttcca |
108 |
Q |
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| T |
38751881 |
agaagaagagaaatcgggaagaaattgagaacacatgttggaattttccatctggaaccaactttgaagatcttgagggagaatattagtaggttttcca |
38751980 |
T |
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| Q |
109 |
aagttcttctcattagggtttgcagaatttggggcattgatacacctttgagctgtttgctctctcagaaaagctagctgtgcttgtaaattgaccacct |
208 |
Q |
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| T |
38751981 |
aagttcttctcattagggttttcagaatttggggcattgagacacctttgagctgcttgctctctcagaaaagctagctgtgcttgtaaattgaccacct |
38752080 |
T |
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| Q |
209 |
acaaagatcaagaagaagaaaatgcatttattagtaaattcaccacctgcatagatcaacacaatgcttatgtattttttctcttttaatagccaaaatt |
308 |
Q |
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| T |
38752081 |
acaaagatcaggaagaagaaaatgcatttattagttaattcaccacctgcatagatcaacacaatgcttatgtattttttctcttttaatagccaaaatt |
38752180 |
T |
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| Q |
309 |
ttattagaaactcaaaccagtgcatcaataatacaccaact |
349 |
Q |
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| T |
38752181 |
ttattagaaactcaaaccagtgcattaataatacaccaact |
38752221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 30904559 - 30904515
Alignment:
| Q |
46 |
ttggaattttccatctggaaccaactttgaagatcttgagggaga |
90 |
Q |
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| T |
30904559 |
ttggaattttccacatggaaccaagtttgaagatcttgagggaga |
30904515 |
T |
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