View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_high_29 (Length: 307)
Name: NF11894_high_29
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 43983859 - 43984145
Alignment:
| Q |
16 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattaatccaagtaataagagatttgagct |
115 |
Q |
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| T |
43983859 |
tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattgatccaagtaataagagatttaagct |
43983958 |
T |
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| Q |
116 |
ccttaaacctaaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgct |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43983959 |
ccttaaacataaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgct |
43984058 |
T |
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| Q |
216 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctctgctcct |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43984059 |
aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctcttctcct |
43984145 |
T |
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