View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11894_high_3 (Length: 903)
Name: NF11894_high_3
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 814; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 18 - 898
Target Start/End: Original strand, 39131733 - 39132614
Alignment:
| Q |
18 |
caattaacagggtcatctctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaatttctcaaaggcttaaatttgatatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39131733 |
caattaacagggtcatctctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaatttctcaaaggcttaaatttgatatg |
39131832 |
T |
|
| Q |
118 |
cagaaacgttttcatatgcaaactagttttttagagttcattgccacagttttgttcgcaaagtttatgtaattagtttcatacgcttgatgcagaagtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39131833 |
cagaaacgttttcatatgcaaactagttttttagagtacattgccacagttttgttcgcaaagtttatgtaattagcttcatacgcttgatgcagaagtt |
39131932 |
T |
|
| Q |
218 |
ctccaagagttatctctcatttgttcagagaaaattgaaattttggctaatacttggaaaatgaaatagactttttgtatggtctgaggtgttttctttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39131933 |
ctccaagagttatctctcatttgttcggagaaaattgaaattttggctaatacttggaaaatgaaatagactttttgtatggtctgaggcgttttctttt |
39132032 |
T |
|
| Q |
318 |
cttcccctggtatatgttattattcagcccaatctcttagttttagttaaactagaactgattttatggcagaaactggttagttttgataaagtgaaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132033 |
cttcccctggtatatgttattattcagcccaatctcttagttttagttaaactggaactgattttatggcagaaactggttagttttgataaagtgaaat |
39132132 |
T |
|
| Q |
418 |
tatgttgcagtttgtagattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgcatattataacttggcctacaag |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39132133 |
tatgttgcagtttgtagattttgttcaggatcatatcataaagtaacaatatattgaagatggtagactaatttgtgcatattataacttggcctacaag |
39132232 |
T |
|
| Q |
518 |
aataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactctgagagcagttccatgaaaacaaactcatttgaaatcaagactcttg |
617 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132233 |
aataaactattcgctctcttgcgataacacgcacataatgcaaaactgaactctgagagcagttccatgaaaacaaactcatttgaaatcaagactcttg |
39132332 |
T |
|
| Q |
618 |
tttgtttttcttatttaaattatagtttatgaaacattccatactcttacacctgcatgttagttgtaaataagttgattgtgaacttaggataaggcc- |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132333 |
tttgtttttcttatttaaattatagtttatgaaacattccatactcatacacctgcatgttagttgtaaataagttgattgtgaacttaggataaggcca |
39132432 |
T |
|
| Q |
717 |
agtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatttcagaatacaatctaatgtctgtggatctacttaaccgtgtaaagg |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132433 |
agtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatttcagaatacaatctaatgtctgtggatctacttaaccgtgtaaagg |
39132532 |
T |
|
| Q |
817 |
taaatagtattgatattggacctacaccatcatccaatgttcaaatgaattagaattaacatgattctctctgctcctcctc |
898 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
39132533 |
taactagtattgatattggacctacaccatcatccaatgttcaaataaattagaattaacaggattctctctattcctcctc |
39132614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 39125847 - 39126106
Alignment:
| Q |
18 |
caattaacagggtcatctctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaatttctcaaaggcttaaatttgatatg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
39125847 |
caattaacagggtcatctttatctttggcttactgttctttcttt-----ctattgtatattgtttgtttttaatttctcaaaggcttaaacttgatatg |
39125941 |
T |
|
| Q |
118 |
cagaaacgttttcatatgcaaactagttttttagagttcattgccacagttttgttcgcaaagtttatgtaattagtttcatacgcttgatgca--gaag |
215 |
Q |
| |
|
|| ||| |||||||||| |||| ||| | |||||||| || ||||||| ||||||| ||||| |||||||||||| |||||||||| | || |
|
|
| T |
39125942 |
cataaatgttttcatatacaaattagctatttagagtaca-tgccacacttttgtttgcaaattttatgtaatta---------gcttgatgcagtgtag |
39126031 |
T |
|
| Q |
216 |
ttctccaagagttatctctcatttgttcagagaaaattgaaattttggctaatacttggaaaatgaaatagactt |
290 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |||| |
|
|
| T |
39126032 |
ttgtccaagagttatctctcatttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaactt |
39126106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 39492573 - 39492467
Alignment:
| Q |
399 |
agttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgcata |
498 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| || |||| |||||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
39492573 |
agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatgtcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata |
39492474 |
T |
|
| Q |
499 |
ttataac |
505 |
Q |
| |
|
| ||||| |
|
|
| T |
39492473 |
taataac |
39492467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 80 - 283
Target Start/End: Complemental strand, 39470717 - 39470516
Alignment:
| Q |
80 |
gttcatttttaatttctcaaaggcttaaatttgatatgcag-aaacgttttcatatgcaaactagttttttagagttcattgccacagttttgttcgcaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | || ||| ||||||||| |||||||||| ||| |||| || |||||| |||||||| ||| |
|
|
| T |
39470717 |
gttcatttttaatttctcaaaggcttaagtttgatgcgtagaaaatgttttcata-acaaactagttatttggagtaca-tgccacgcttttgttcacaa |
39470620 |
T |
|
| Q |
179 |
agtttatgtaattagtttc-atacgcttgatgcagaagttctccaagagttatctctcatttgttcagagaaaattgaaattttggctaatacttggaaa |
277 |
Q |
| |
|
|||| ||||||||| ||| |||| ||||||||| |||||| ||||| | |||||||||||||| |||||| ||||||| ||| |||| |||||||| |
|
|
| T |
39470619 |
tgtttttgtaattagcttcaatacacttgatgcaaaagttcctcaaga--tttctctcatttgttccgagaaagttgaaatcttgattaatgcttggaaa |
39470522 |
T |
|
| Q |
278 |
atgaaa |
283 |
Q |
| |
|
|||||| |
|
|
| T |
39470521 |
atgaaa |
39470516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 39470398 - 39470309
Alignment:
| Q |
351 |
ctcttagttttagttaaactagaactgattttatggcagaaactggttagttttgataaagtgaaattatgttgcagtttgtagattttgtt |
442 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||||| | ||| ||||||||| ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
39470398 |
ctcttggttttagttaa-ctataactgattttatggaataaa-tggttagttatgataaagtgaaattttgttgcaccttgtagattttgtt |
39470309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 396 - 499
Target Start/End: Original strand, 2363524 - 2363627
Alignment:
| Q |
396 |
gttagttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgc |
495 |
Q |
| |
|
|||||||||||| |||||||||| | |||| ||| ||||||||||||| ||| |||||| ||| ||||||||||||| | || |||| |||| || || |
|
|
| T |
2363524 |
gttagttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatctgcgc |
2363623 |
T |
|
| Q |
496 |
atat |
499 |
Q |
| |
|
|||| |
|
|
| T |
2363624 |
atat |
2363627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 39503739 - 39503680
Alignment:
| Q |
232 |
tctcatttgttcagagaaaattgaaattttggctaatacttggaaaatgaaatagacttt |
291 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
39503739 |
tctcatttgttaagagaaatttggtatcttggctaatgcttggaaaatgaaatagacttt |
39503680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 528
Target Start/End: Original strand, 39126264 - 39126359
Alignment:
| Q |
433 |
agattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgcatattataacttggcctacaagaataaactatt |
528 |
Q |
| |
|
|||||||| | || |||||||| |||| |||| |||| |||| || | || |||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
39126264 |
agattttgcttagaatcatatctggaagttgcaacatatggaagttgtttgattcatttgtgcatataataacttgacctacaagaatcaactatt |
39126359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 634
Target Start/End: Original strand, 39372284 - 39372416
Alignment:
| Q |
500 |
tataacttggcctacaagaataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactctgagagcagttccatgaaaacaaactcat |
599 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| | |||||| || ||||| ||||||| | |||| |||||| || |||||| ||||| |
|
|
| T |
39372284 |
tataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagggcagttgcaagaaaaccaactcca |
39372383 |
T |
|
| Q |
600 |
ttgaaatcaagactcttgtttgtttttcttattta |
634 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |
|
|
| T |
39372384 |
ttgaaatcaaggtact--tttgtttttcttattta |
39372416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 334 - 495
Target Start/End: Original strand, 39605019 - 39605179
Alignment:
| Q |
334 |
ttattattcagcccaatct-cttagttttagttaaactagaactgattttatggcagaaactggttagttttgataaagtgaaattatgttgcagtttgt |
432 |
Q |
| |
|
||||||||||||||| ||| ||||||||| ||||| | | ||||| || |||||| || || |||||||||| | |||||||||| || |||| ||| |
|
|
| T |
39605019 |
ttattattcagcccagtctgcttagttttggttaat-tgggactgacttgatggcataa-ctagttagttttgttgaagtgaaattttggtgcaccttgc |
39605116 |
T |
|
| Q |
433 |
agattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgc |
495 |
Q |
| |
|
||||||||||||| | | |||||| ||| | ||| ||||||||| || |||| ||||| |||| |
|
|
| T |
39605117 |
agattttgttcagaaacttatcatgaagaaacaaaatattgaagctgctagattcattcgtgc |
39605179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University