View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_high_30 (Length: 298)

Name: NF11894_high_30
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_high_30
NF11894_high_30
[»] chr5 (5 HSPs)
chr5 (113-274)||(14395249-14395410)
chr5 (117-205)||(13208700-13208789)
chr5 (117-208)||(2707443-2707533)
chr5 (117-180)||(34064854-34064917)
chr5 (164-253)||(13209247-13209334)
[»] chr7 (2 HSPs)
chr7 (26-274)||(31871946-31872171)
chr7 (117-204)||(23365284-23365372)
[»] chr3 (1 HSPs)
chr3 (117-205)||(42153169-42153258)
[»] scaffold0085 (1 HSPs)
scaffold0085 (117-205)||(39096-39184)
[»] chr8 (2 HSPs)
chr8 (117-208)||(29703435-29703526)
chr8 (117-168)||(5664264-5664315)
[»] chr4 (4 HSPs)
chr4 (117-177)||(56459730-56459790)
chr4 (115-205)||(4782517-4782608)
chr4 (116-182)||(30765435-30765501)
chr4 (118-162)||(19330200-19330244)
[»] chr1 (2 HSPs)
chr1 (117-177)||(19402353-19402413)
chr1 (118-162)||(45817318-45817362)
[»] chr2 (1 HSPs)
chr2 (117-181)||(30874719-30874782)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 113 - 274
Target Start/End: Complemental strand, 14395410 - 14395249
Alignment:
Q  113 ttatttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctataaaa 212  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14395410 ttatttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagattaaaaacttaacatgagtttcaccctattctataaaa 14395311  T
Q  213 attcatgaacccatatacgcttctttgttcttcgcgttccaataccaagcttatctctacgt 274  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  14395310 attcatgaacccacctacgcttctttgttcttcgcgttccaataccaagcttatctctacgt 14395249  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 13208700 - 13208789
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaa-aatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 205  Q
    ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  13208700 ttatgtgagaatggtgagaacacttatcaacctttagataaaaaaatgaatggaccagattaaaagcttcacatgtgtctcaccctattc 13208789  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 2707443 - 2707533
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 208  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||| ||||| ||||||||||||  | |||||||| | | ||||||||||    
T  2707443 ttatatgagaatggtgagaacc-ttatcaacctttagataaaaaataaatggtccagattaaaaggctcacatgtgtcttaacctattctat 2707533  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 34064917 - 34064854
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaa 180  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| | |||||||||    
T  34064917 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaa 34064854  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 13209334 - 13209247
Alignment:
Q  164 aatggaccagattaaaagcttaacatgtgtttcaccctattctataaaaattcatgaacccatatacgcttctttgttcttcgcgttcca 253  Q
    |||||| |||||||||||||| |||||||| ||||||||||| || ||  |||||||||||  | || ||||||||||||| | ||||||    
T  13209334 aatggatcagattaaaagcttcacatgtgtctcaccctattcaatcaattttcatgaaccc--acacacttctttgttctttgtgttcca 13209247  T

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Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 274
Target Start/End: Original strand, 31871946 - 31872171
Alignment:
Q  26 tgttgttgttataggataaaagggtcattttctattatccacaaatttatattcgattacagggcatttctggtgagaatgagttatttatttatgtgag 125  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||| || |||||||||||||||||||||||||    
T  31871946 tgttgttgttataggataaaagggtcattttcttttatccacaaatttatatccgattagagggcatatctagtaagaatgagttatttatttatgtgag 31872045  T
Q  126 aatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctataaaaattcatgaaccca 225  Q
    |||                      ||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  31872046 aat----------------------tagataaaaaatgaatggaccagattaaaagcttaacatgtatttctgcctattctataaaaattcatgaaccca 31872123  T
Q  226 tatacgcttctttgttcttcgcgttccaataccaagcttatctctacgt 274  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||    
T  31872124 catac-cttctttgttcttcgcgttccaataccaagcttatctctacgt 31872171  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 23365372 - 23365284
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctatt 204  Q
    |||||||||||| || |||||| ||| |||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||    
T  23365372 ttatgtgagaattgtgagaacacttaccaacctttagataaaaaatgaatgaaccagattaaaaagcttcacatgtgtctcaccctatt 23365284  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 42153169 - 42153258
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaaccttt-agataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 205  Q
    ||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  42153169 ttatgtgagaatggtgagaacacttatcagccttttagataaaaaatgaatggaccagattaaaagcttatcatgtgtctcaccctattc 42153258  T

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Target: scaffold0085 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 39096 - 39184
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 205  Q
    ||||||||||| | | |||||| || |||  ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  39096 ttatgtgagaacgatgagaacacttgtcagtctttagataaaaaatgaatggaccagattaaaaacttcacatgtgtctcaccctattc 39184  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 29703526 - 29703435
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 208  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||| ||||| | | ||||||| ||| |||||||| ||| ||||||||||    
T  29703526 ttatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaaaaacttcacatgtgtctcatcctattctat 29703435  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 5664315 - 5664264
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatgg 168  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| |||||    
T  5664315 ttatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatgg 5664264  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 56459790 - 56459730
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 177  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  56459790 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 56459730  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 4782608 - 4782517
Alignment:
Q  115 atttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctattc 205  Q
    ||||||||||||||||| |||||| |||||||  |||| ||||||| |||| ||| |||||| ||||| || |||||||| ||| |||||||    
T  4782608 atttatgtgagaatggtgagaacacttatcaatttttaaataaaaattgaaaggatcagattaaaaagtttcacatgtgtctcatcctattc 4782517  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 30765501 - 30765435
Alignment:
Q  116 tttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagc 182  Q
    ||||||| |||||||| |||| | |||||||||||||||| |||||  | ||| |||||||||||||    
T  30765501 tttatgtaagaatggtgagaatacttatcaacctttagatcaaaaacaagtggtccagattaaaagc 30765435  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 19330244 - 19330200
Alignment:
Q  118 tatgtgagaatggtaagaacagttatcaacctttagataaaaaat 162  Q
    ||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  19330244 tatgtgagaatggtaggaacaattatcaaccattagattaaaaat 19330200  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 19402353 - 19402413
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 177  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  19402353 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 19402413  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 45817318 - 45817362
Alignment:
Q  118 tatgtgagaatggtaagaacagttatcaacctttagataaaaaat 162  Q
    ||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  45817318 tatgtgagaatggtaggaacaattatcaaccattagattaaaaat 45817362  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 30874719 - 30874782
Alignment:
Q  117 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaag 181  Q
    ||||||||||||| |||||| | ||||||||||||||||  |||||||||||   ||||||||||    
T  30874719 ttatgtgagaatgataagaataattatcaacctttagat-taaaatgaatggttaagattaaaag 30874782  T

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