View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11894_high_38 (Length: 236)
Name: NF11894_high_38
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7377151 - 7377380
Alignment:
| Q |
1 |
acagttagtttgttaagaataacaaactaactaaactagcaatttttctgtttaatgtgtgtcctttcaaatgataatgt--------gagcccaaccat |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
7377151 |
acagttagtttgttaagaataacaaactaactaaactagcaatttttctgtttaatgtgtgtcctttcaaatgataatgtgactatgtgagcccaactat |
7377250 |
T |
|
| Q |
93 |
aatttataagaggcataatagacttggtcattctcatgcaaaagttgttaaatcagttatgcaactatacaaaacatctttcatcaataaaaatgtttct |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7377251 |
aatttctaagaggcataatagacttggtcattctcatgcaaaagttgttaaatcagttatgcaactatacaaaacatctttcatcaataaaaatgtgtct |
7377350 |
T |
|
| Q |
193 |
atgttgtgtcatgcctaggtaaatctcgca |
222 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
7377351 |
atgttatgtcatgcctaggtaaatctcgca |
7377380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University