View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_high_5 (Length: 817)

Name: NF11894_high_5
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_high_5
NF11894_high_5
[»] chr7 (1 HSPs)
chr7 (3-810)||(31880553-31881363)
[»] chr6 (2 HSPs)
chr6 (348-413)||(15039742-15039807)
chr6 (559-628)||(14469690-14469759)
[»] chr3 (1 HSPs)
chr3 (491-531)||(22097271-22097311)
[»] scaffold0019 (1 HSPs)
scaffold0019 (3-33)||(110658-110688)


Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 3 - 810
Target Start/End: Original strand, 31880553 - 31881363
Alignment:
Q  3 attcaagtcaagcactcacacactacatcatctttctcttgtacttgctgcattcgtcatcatttacaggtttgatttttatctctattcctttctcttg 102  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  31880553 attcaagccaagcactcacacactacatcatctttatcctgtacttgctgcattcatcatcatttacaggtttgacttttatctctattcctctctcttg 31880652  T
Q  103 cttttaatttaaaagnnnnnnnnnntcatgtttttacacatttttagaaatggctagggttagggattagctgacttattgtggttagagacagtgtatc 202  Q
    |||| ||||||||||          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||     
T  31880653 ctttaaatttaaaagaaaaaaaa--tcatgtttttacacatttttagaaatggctagggttagggattagatgacttattgtggttagagactgtgtatt 31880750  T
Q  203 ataggtttattgtgctgtatatgaacgaaaatcactactgaaatgccatggaatctcattttttggaagattcacccaattttaaattttnnnnnnntaa 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  31880751 ataggtttattgtgctgtatatgaacgaaaatcactactgaaatgccatggaatctcattttttggaagattcacccaattttaaattt-aaaaaaataa 31880849  T
Q  303 gggttttgagaaattcttggaaaaagttgtgatttgagttcatggtcatgacattattgagtttgtagaaatataggggtgaaattggtgttgaaatatg 402  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31880850 tggttttgagaaattcttggaaaaagttgtgatttgagttcatgttcatgacattattgagtttgtagaaatataggggtgaaattggtgttgaaatatg 31880949  T
Q  403 ctagattgtgttgaaaaattgcaagaacatagattttgaaaatctggaaaattgcaatcgcgaagaaattcgttgatagcgaaatttcttcgctaatggc 502  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  31880950 ctggattgtgttgaaaaattgcaagaacaaagattttgaaaatctggaaaattgcaatcgcgaagaaattcgctaatagcgaaatttcttcgttaatggc 31881049  T
Q  503 aaaatttgcccagattttgagttgaatttcgctgatagcgaaattttattttaatgttttattccatgcctattctaattctttctattctatatgttgg 602  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31881050 aaaatttgcccagattttgagttgaatttcgctgataacgaaattttattttaatgttttattccatgcctgttctaattctttctattctatatgttgg 31881149  T
Q  603 catttcctggttgttttgcaaatggcaccgaaatcgcaacccaaaactgttggtaccaaacgcccaagaggcaaatctg------cctcatccacaccac 696  Q
     ||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||      |||||||||||||||    
T  31881150 tatttcatggttattttgcagatggcaccgaaatcgcaatccaaaactgttggtaccaaacgcccaagaggcaaatctgcctcatcctcatccacaccac 31881249  T
Q  697 caccatatgacccaagtcgtttccccacccgaggccaatatgagaggttcctgaaaatggacaaatacaaagtctggcccgaaaaagtctttgacattca 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31881250 caccatatgacccaagtcgtttccccacccgaggccaatatgagaggttcctgaaaatggacaaatacaaagtctggcccgaaaaagtctttgacattca 31881349  T
Q  797 ccctgatgtccatc 810  Q
    |||||||| |||||    
T  31881350 ccctgatggccatc 31881363  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 15039742 - 15039807
Alignment:
Q  348 tcatgacattattgagtttgtagaaatataggggtgaaattggtgttgaaatatgctagattgtgt 413  Q
    ||||| |||||| ||||||||||| | | | |||| ||||||||||||||||||||||||||||||    
T  15039742 tcatgccattatcgagtttgtagagacacatgggtaaaattggtgttgaaatatgctagattgtgt 15039807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 628
Target Start/End: Original strand, 14469690 - 14469759
Alignment:
Q  559 ttttattccatgcctattctaattctttctattctatatgttggcatttcctggttgttttgcaaatggc 628  Q
    |||| |||||| ||||||||||||||||||||  | |||||||| | ||||| ||||||||||| |||||    
T  14469690 tttttttccatacctattctaattctttctatgttctatgttggaaattcctcgttgttttgcagatggc 14469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 22097311 - 22097271
Alignment:
Q  491 ttcgctaatggcaaaatttgcccagattttgagttgaattt 531  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  22097311 ttcgctaatggcgaaatttgcccagattttgggttgaattt 22097271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 110688 - 110658
Alignment:
Q  3 attcaagtcaagcactcacacactacatcat 33  Q
    |||||||||||||||||||||||||||||||    
T  110688 attcaagtcaagcactcacacactacatcat 110658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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