View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_high_6 (Length: 681)

Name: NF11894_high_6
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_high_6
NF11894_high_6
[»] chr8 (1 HSPs)
chr8 (1-663)||(37497156-37497805)


Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 37497805 - 37497156
Alignment:
Q  1 gaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaagaggcacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37497805 gaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaagcggcacaa 37497706  T
Q  101 aaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgnnnnnnnggagttatttttattgggtgtagggagagggtgtaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||| |||||||||||||             ||    
T  37497705 aaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgaaaaaaagaagttatctttattgggtgta-------------aa 37497619  T
Q  201 aattaaagaatgataattataaaatcaaagttcattgataaagtagtattgtagaatgcagatacttgcctctttcagtggatctaacatactcaaagac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37497618 aattaaagaatgataattataaaatcaaagttcattgataaagtagtattgtagaatgcagataattgcctctttcagtggatctaacatactcaaagac 37497519  T
Q  301 caagnnnnnnncagactgagccagtgtatataaccaagagtacactttctcttcttcctttgttcttgatcctccatcaactttccctgcaaatgaacac 400  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497518 caagtttttttcagactgagccagtgtatataaccaagagtacactttctcttcttcctttgttcttgatcctccatcaactttccctgcaaatgaacac 37497419  T
Q  401 aacccagataagtaaaacaccnnnnnnnngaaactttagcataacattaactactaaattaacaagttatggaaaatcatagaagaatagaagcatactt 500  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497418 aacccagataagtaaaacaccaaaaaaaagaaactttagcataacattaactactaaattaacaagttatggaaaatcatagaagaatagaagcatactt 37497319  T
Q  501 ccacagataaatcgtcgaaaacattttaagactgaagaagggaaatgatctttgtgtgtattgggtttgtttacaagaggaagagtgtagtgatggccat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497318 ccacagataaatcgtcgaaaacattttaagactgaagaagggaaatgatctttgtgtgtattgggtttgtttacaagaggaagagtgtagtgatggccat 37497219  T
Q  601 tattagcagagaaaagggtggaaactttgattcttcccatagaaggattgaaaaaataatggg 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497218 tattagcagagaaaagggtggaaactttgattcttcccatagaaggattgaaaaaataatggg 37497156  T

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