View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_high_7 (Length: 631)
Name: NF11894_high_7
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 2151522 - 2152119
Alignment:
| Q |
1 |
ccttttcaacattgttggtacaattgagaaatattacgttttcataatgatcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgt- |
99 |
Q |
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| T |
2151522 |
ccttttcaacattgttggtacaattgagaaatattacgttttcataatggtcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtc |
2151621 |
T |
|
| Q |
100 |
-----ctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattctttgtctctcatgataaatatgtttgacagcaaattct |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
2151622 |
tatgtctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattctttgtctctcacggtaaatatgtttgacaacaaattct |
2151721 |
T |
|
| Q |
195 |
cttccatttgagagtgtaatcaaaggttggttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgatttt |
294 |
Q |
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| T |
2151722 |
cttccatttgagagtgtaatcaaaggttgcttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgatttt |
2151821 |
T |
|
| Q |
295 |
cttctcttaattggaaagggaactcnnnnnnnngttccgacgagtttccacaatgtctcttgtcacaaattggagctgtgctttttgttgagtgaaaaag |
394 |
Q |
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||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2151822 |
cttttcttaattggaatgggaactcaaaaaaaagatccgacgagtttccacaatgtctcttgtcacacattggagctgtgctttttgttgagtgaaaaag |
2151921 |
T |
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| Q |
395 |
caagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt---------ggtgtgaatcactaaattgaaatattgattgtc |
485 |
Q |
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| T |
2151922 |
caagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagtggtgcttgaggtgtgaatcactaaattgaaatattgattgtc |
2152021 |
T |
|
| Q |
486 |
aactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattttttatatat |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
2152022 |
aactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattatatatatat |
2152119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 2146135 - 2146433
Alignment:
| Q |
18 |
gtacaattgagaaatattacgttttcataatgatcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatgttttgaatgaacc |
117 |
Q |
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||||||||||||||| ||||||||||||||||| | | | |||| ||||| ||||||| |||||||||||| || |||||||||||||| ||||| |
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| T |
2146135 |
gtacaattgagaaatgttacgttttcataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtctatgttttgaaggaacc |
2146234 |
T |
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| Q |
118 |
ttcttggtggacaatcattgagatccttgaccaaaattctttgtctctcatgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaa |
217 |
Q |
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| T |
2146235 |
ttcttggtggacaatcattgggatcatccatccatattctttggctctcataggatatatttttgataacatattcttttccatttgagagtgtaatcaa |
2146334 |
T |
|
| Q |
218 |
aggttggttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaa |
316 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
2146335 |
aggttgcttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttcttctcttaattggaaagggaa |
2146433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 2142058 - 2142267
Alignment:
| Q |
67 |
tgtccaattggaaaggtgaatcatcgtcgatgtctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattctttgtctctc |
166 |
Q |
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||||| |||||||||||||||||| || || ||||||||| || ||||| |||||||| |||| |||| |||| | | | |||||||||| || | |
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| T |
2142058 |
tgtcccattggaaaggtgaatcattgttgaggtctatgttc--aaggaaccgtcttggtgaacaaccattaggatcatccaaccaaattctttgacttgc |
2142155 |
T |
|
| Q |
167 |
atgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggt---tattcttgcaaacaacttcaaatcctgggtacacacat |
263 |
Q |
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||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| |
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| T |
2142156 |
atgggaaaattttttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtacccacat |
2142255 |
T |
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| Q |
264 |
cgatcactttga |
275 |
Q |
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| T |
2142256 |
cgatcactttga |
2142267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 359 - 448
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
359 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
448 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||| |||| ||||||||| |||||||||||||||||| |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 452
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
366 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
452 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||||| |||| ||| ||||| |||||||||||||||| |||||||| |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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