View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_high_9 (Length: 553)
Name: NF11894_high_9
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_high_9 |
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| [»] scaffold0265 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 15 - 535
Target Start/End: Complemental strand, 20041979 - 20041459
Alignment:
| Q |
15 |
catagggtattagaagttgcaatcacaatgtttttaaataactaaataagagtgcgtattaaaatacacaacaagaagttgcaaccacaatggtattatc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20041979 |
catagggtattagaagttgcaatcacaatgtttttaaataactaaataagagtgcgtattaaaatacacaacaagaagttgcaaccacagtggtattatc |
20041880 |
T |
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| Q |
115 |
atcatcatacaataaacccgttgatatacctatggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatat |
214 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
20041879 |
atcatcatacaataaaccagttgatatacctatggaagacccgttgatatggtcttcaacccattaggggtaccctcacggatgaatgtaggacagatat |
20041780 |
T |
|
| Q |
215 |
tggaatgttgaggcatcacaaaacaccaactaagagttagaaggttacaatacggctgatatgaaaggttgaactcacctcatcttcatcagaagattcg |
314 |
Q |
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| T |
20041779 |
tggaatgttgaggcatcacaaaacaccaactaagagttagaaggttacaatatggctgatatgaaaggttgaactcacctcatcttcatcagaagattcg |
20041680 |
T |
|
| Q |
315 |
tcagattctaagtcagaactatcagccttctttgcgggtgcactccctattttggaaggaacaacctctgcagcaggtttctaaaccatgaaacaaaaaa |
414 |
Q |
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| T |
20041679 |
tcagattctaagtcagaactatcagccttctttgcgggtgcactccctattttggaaggaacaacctctgcagcaggtttctaaaccatgaaacaaaaaa |
20041580 |
T |
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| Q |
415 |
gtttaattaaaaagggaattttataaaaccggtaaatgcaatgatataaaattaaggacactatcaccatgcgataaacttcaaaatatctaatacctca |
514 |
Q |
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| T |
20041579 |
gtttaattaaaaagggaattttataaaaccggtaaatggaatgatataaaattaaggacactatcaccatgcaataaacttcaaaatatctaatacctca |
20041480 |
T |
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| Q |
515 |
tcttcatcagaagattcttca |
535 |
Q |
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||||||||| ||||||||||| |
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| T |
20041479 |
tcttcatcaaaagattcttca |
20041459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 426
Target Start/End: Complemental strand, 20041441 - 20041350
Alignment:
| Q |
335 |
atcagccttctttgcgggtgcactccctattttggaaggaacaacctctgcagcaggtttctaaaccatgaaacaaaaaagtttaattaaaa |
426 |
Q |
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| T |
20041441 |
atcagctttctttacaggtgcacttccatttttagatggaacaacttttgttgcagggttctaaaccatgacacaaaaatgtttaattaaaa |
20041350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 18153379 - 18153302
Alignment:
| Q |
146 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatattggaatgtt |
223 |
Q |
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| T |
18153379 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcacgaatgaatgtaggacagatattggaatgtt |
18153302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 535
Target Start/End: Original strand, 28565641 - 28565700
Alignment:
| Q |
476 |
tatcaccatgcgataaacttcaaaatatctaatacctcatcttcatcagaagattcttca |
535 |
Q |
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||||| ||||| |||||||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
28565641 |
tatcatcatgcaataaacttcaaaatgtctattaccttgtcttcatcagaagattcttca |
28565700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 407
Target Start/End: Original strand, 28565222 - 28565295
Alignment:
| Q |
334 |
tatcagccttctttgcgggtgcactccctattttggaaggaacaacctctgcagcaggtttctaaaccatgaaa |
407 |
Q |
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||||||| |||||||||||| ||||||| | |||||||||||| | | |||||||||||||| ||| |||||| |
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| T |
28565222 |
tatcagctttctttgcgggtacactcccattcttggaaggaacagcttttgcagcaggtttctgaacaatgaaa |
28565295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 31396940 - 31396863
Alignment:
| Q |
146 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatattggaatgtt |
223 |
Q |
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| T |
31396940 |
atggaagaaccattgatatggtcttcaacccattaggggtaccctcgcaaatgaatgtaggacaaatattgcaatgtt |
31396863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 6606 - 6561
Alignment:
| Q |
146 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
191 |
Q |
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| T |
6606 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
6561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 21826178 - 21826223
Alignment:
| Q |
146 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21826178 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
21826223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 222329 - 222398
Alignment:
| Q |
146 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatatt |
215 |
Q |
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|||||| ||||||||||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
222329 |
atggaacacccgttgatatggtcttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatt |
222398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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