View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_10 (Length: 556)
Name: NF11894_low_10
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_10 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Complemental strand, 14735 - 14213
Alignment:
| Q |
18 |
atcaaaataacatgaacaacttataatttaaactacactatattgactttgaaacaccaattcaaatcaatcttaccacgacactgggacataaaatttt |
117 |
Q |
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| T |
14735 |
atcaaaataacatgaacaacttataatttaaactacactatattgactttgaaacaccaattcaaatcaatcttaccacaacactgggacataaaatttt |
14636 |
T |
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| Q |
118 |
cttaatcagctttgagtctccacccatatgcagcacgttccatattcttctattaggtgttatcttcgtcaagaatataataaacaaagatttttgcccc |
217 |
Q |
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| T |
14635 |
cttaatcagctttgactctccacccatatgcagcacgttccatattcttctattaggtgttatattcgtcaagaatataataaacaaagatttttgcccc |
14536 |
T |
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| Q |
218 |
atttcatcaatgtcaatgtcttcagaagcaatcactttaaaagtaggcataagtttagtatcatcatcttcgccttggatctcctcatctagaaaaccag |
317 |
Q |
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| T |
14535 |
atttcatcaatgtcaatgtcttcagaagcaatcactttaaaagtaggcataagtttagtatcatcatcttcgccttggatctcctcatctagaaaaccag |
14436 |
T |
|
| Q |
318 |
ccgacaacacaaaactccacgttcttcctgacctttgcaaatcattaaccgtttcaggtttaaaatctgccaaaataaaaacatcgccaaacaatgtttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14435 |
ccgacaacacaaaactccacgttcttcctgacctttgcaaatcattaaccgtttcaggtttaaaatctgccaaaataaaaacatcgccaaacaatgtttt |
14336 |
T |
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| Q |
418 |
gtataactcttttccatgaccagaggacctgtttttccaagtatcagttttaacgacgtagtgattcctaccatatgaatgtgatcttgactcctcaagt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14335 |
gtataactcttttccatgaccagaggacctgtttttccaagtatcagttttaacgacgtagtgattcctaccatatgaatgtgatcttgactcctcaagt |
14236 |
T |
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| Q |
518 |
gaaatcacttctgcataaggtga |
540 |
Q |
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||||||||||||||||||||||| |
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| T |
14235 |
gaaatcacttctgcataaggtga |
14213 |
T |
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