View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_low_12 (Length: 535)

Name: NF11894_low_12
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_low_12
NF11894_low_12
[»] chr2 (2 HSPs)
chr2 (131-526)||(24454243-24454638)
chr2 (404-507)||(23348996-23349100)
[»] chr8 (4 HSPs)
chr8 (420-526)||(5662583-5662689)
chr8 (404-438)||(24788119-24788153)
chr8 (399-507)||(27541575-27541683)
chr8 (404-507)||(31100888-31100992)
[»] chr3 (7 HSPs)
chr3 (410-526)||(47763912-47764028)
chr3 (404-507)||(24761914-24762018)
chr3 (404-507)||(37982350-37982454)
chr3 (404-507)||(17681768-17681871)
chr3 (404-438)||(2549938-2549972)
chr3 (402-435)||(29861913-29861946)
chr3 (404-507)||(53973302-53973406)
[»] chr6 (1 HSPs)
chr6 (404-507)||(3065699-3065802)
[»] chr5 (2 HSPs)
chr5 (404-511)||(7473501-7473609)
chr5 (404-507)||(9043803-9043907)
[»] scaffold0096 (1 HSPs)
scaffold0096 (404-507)||(27411-27514)
[»] chr4 (1 HSPs)
chr4 (406-435)||(10195656-10195685)
[»] chr7 (1 HSPs)
chr7 (404-507)||(43071398-43071502)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 131 - 526
Target Start/End: Original strand, 24454243 - 24454638
Alignment:
Q  131 gataaaacatatttcttggcaatggtttctaccaaaataagtggatactcggtgtcacttttatgattggtttgttcgcccctttggtgtaacattgtag 230  Q
    |||||||| |||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24454243 gataaaacctatttcttggcaatggtttctagcaaagtaattggatactcagtgtcacttttatgattggtttgttcgcccctttggtgtaacattgtag 24454342  T
Q  231 gcaactcaactttttctatttttggtcttccaacttaatgggtttagtagagcttgcgctgtttccannnnnnnagtgtagtgcttcttgcactcatatc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||       ||||||||||||||||||||||||||    
T  24454343 gcaactcaactttttctatttttggtcttccaacttaatgggtttagtagagcttgtactgtttccattttcttagtgtagtgcttcttgcactcatatc 24454442  T
Q  331 cattaacaatatataaatttacctatgctgataaatnnnnnnnnttgtataattccgtctctatcatcaatcttcatacttatatctaatcctaattaac 430  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  24454443 cattaacaatatataaatttacctatgctgataaataaaaaaaattgtataattccgcctctatcatcatacttcatacttatatctaatcttaattaac 24454542  T
Q  431 attgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcatttagcttgacattcatctcat 526  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  24454543 attgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatcatttggcttgacattcatctcat 24454638  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 23349100 - 23348996
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 502  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  | ||||||||||||||    
T  23349100 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 23349001  T
Q  503 cattt 507  Q
    |||||    
T  23349000 cattt 23348996  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 526
Target Start/End: Original strand, 5662583 - 5662689
Alignment:
Q  420 tcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcatttagcttgacattc 519  Q
    |||||||||| ||||||||   | ||||||| | |||||||  ||||||||||| |||| |||||||| ||||| ||||||||||||| ||| | |||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc 5662682  T
Q  520 atctcat 526  Q
    |||||||    
T  5662683 atctcat 5662689  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 24788153 - 24788119
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaa 438  Q
    |||||||||||||||||| ||||||||||||||||    
T  24788153 tcatacttatatctaatcttaattaacattgctaa 24788119  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 507
Target Start/End: Complemental strand, 27541683 - 27541575
Alignment:
Q  399 aatcttcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatc 498  Q
    |||| |||||||||||||||||| |  |||||||||||||   | ||||||| | ||||||| |||   || ||| ||||||||||    ||||||||||    
T  27541683 aatcatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatc 27541584  T
Q  499 tcatcattt 507  Q
    |||||||||    
T  27541583 tcatcattt 27541575  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 31100992 - 31100888
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 502  Q
    |||||||||||||||||| |  |||||||||||||   | ||||||||| ||||||| |||  ||| ||| || ||||||||  | ||||| ||||||||    
T  31100992 tcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcat 31100893  T
Q  503 cattt 507  Q
    |||||    
T  31100892 cattt 31100888  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 526
Target Start/End: Complemental strand, 47764028 - 47763912
Alignment:
Q  410 ttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcatttag 509  Q
    ||||||||||||||| ||||||||||||| | | ||||||| | |||| ||  | ||||||||| |||| |||||||| ||||||||||  ||||| | |    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctgg 47763929  T
Q  510 cttgacattcatctcat 526  Q
    || | ||||||||||||    
T  47763928 ctaggcattcatctcat 47763912  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 24762018 - 24761914
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 502  Q
    ||||||||||||||||||||  |||||||||||||   | ||||||| | ||||||| |||  ||| ||| || |||||| |  ||||||||||||||||    
T  24762018 tcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcat 24761919  T
Q  503 cattt 507  Q
    |||||    
T  24761918 cattt 24761914  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 507
Target Start/End: Original strand, 37982350 - 37982454
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 502  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  ||||||||||||||||    
T  37982350 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcat 37982449  T
Q  503 cattt 507  Q
    |||||    
T  37982450 cattt 37982454  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 507
Target Start/End: Original strand, 17681768 - 17681871
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 503  Q
    |||||||||||||||||| |  ||||||||| |||     ||||||| | ||||||| |||  ||| ||| |||||||||| || |||||||||||||||    
T  17681768 tcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcatc 17681867  T
Q  504 attt 507  Q
    ||||    
T  17681868 attt 17681871  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 2549938 - 2549972
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaa 438  Q
    |||||||||||||||||| ||||||||||||||||    
T  2549938 tcatacttatatctaatcttaattaacattgctaa 2549972  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 29861946 - 29861913
Alignment:
Q  402 cttcatacttatatctaatcctaattaacattgc 435  Q
    |||||||||||| |||||||||||||||||||||    
T  29861946 cttcatacttatttctaatcctaattaacattgc 29861913  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 53973406 - 53973302
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 502  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  53973406 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctcat 53973307  T
Q  503 cattt 507  Q
    |||||    
T  53973306 cattt 53973302  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 507
Target Start/End: Original strand, 3065699 - 3065802
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 503  Q
    |||||||||||||||||| |  ||||||| |||||   | ||||||| | ||||||| |||  ||| ||| ||||||||||  |||||||||||||||||    
T  3065699 tcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctcatc 3065798  T
Q  504 attt 507  Q
    ||||    
T  3065799 attt 3065802  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 511
Target Start/End: Complemental strand, 7473609 - 7473501
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 502  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  7473609 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 7473510  T
Q  503 catttagct 511  Q
    |||||||||    
T  7473509 catttagct 7473501  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 507
Target Start/End: Original strand, 9043803 - 9043907
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 502  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  | ||||||||||||||    
T  9043803 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 9043902  T
Q  503 cattt 507  Q
    |||||    
T  9043903 cattt 9043907  T

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Target: scaffold0096 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 507
Target Start/End: Original strand, 27411 - 27514
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 503  Q
    |||||||||||||||||| |  |||||||||||||     ||||||| | ||||||| |||  ||| ||| ||||||||||  | |||||||||||||||    
T  27411 tcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatc 27510  T
Q  504 attt 507  Q
    ||||    
T  27511 attt 27514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 435
Target Start/End: Original strand, 10195656 - 10195685
Alignment:
Q  406 atacttatatctaatcctaattaacattgc 435  Q
    ||||||||||||||||||||||||||||||    
T  10195656 atacttatatctaatcctaattaacattgc 10195685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 43071502 - 43071398
Alignment:
Q  404 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 502  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| || ||||||||  | ||||||||||||||    
T  43071502 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 43071403  T
Q  503 cattt 507  Q
    |||||    
T  43071402 cattt 43071398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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