View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_14 (Length: 509)
Name: NF11894_low_14
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 25 - 491
Target Start/End: Original strand, 28489525 - 28489994
Alignment:
| Q |
25 |
gtagagactcatattttatataaggtaaggaaaaataatgtgaatctttttacttaagcttccaacttcatttttcattttaatttcattcccactat-- |
122 |
Q |
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| T |
28489525 |
gtagagactcatattttatataaggtaaggaaaaataatgtgaatctttttacttaagcttccatcttcgtttt-cattttaatttcattcccaatatct |
28489623 |
T |
|
| Q |
123 |
-atctctccaaaatgtacttgagcttccatatgcttaggccaacatcagttttttcatttttgttagtaacccttcatcttttattaccaggtaatctct |
221 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28489624 |
catctttccaaaatgtacttgagcttccatctgcttaggccaacatcagttttttcatttttgttagtaacccttcatcttttattaccaggtaatctct |
28489723 |
T |
|
| Q |
222 |
annnnnnnncgacattaaggtaattttattttttataaatcatatgatcttactt-gtccagaattaaatcatgttgtttcctgttgcaggggccaattc |
320 |
Q |
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| T |
28489724 |
attttttttcgacattaaggtaattttattttttataaatcatatgatcttactttgtccagaattaaatcatgttgtttcctgttgcaggggccaattc |
28489823 |
T |
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| Q |
321 |
agcggtgttcacactaattaacaagtgcaactacgcagtgtggccagctgctcttactacaagcacaaacgcaactctcccaaccaccggcttaatttta |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28489824 |
agcggtgttcacactaattaacaagtgcaactacgcagtgtggccagctgctcttactacaagcacaaacgcaactctcccaaccaccggcttaatttta |
28489923 |
T |
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| Q |
421 |
aagtcgggaaagacttccaccgtcacagcacccgacacctggtctggccgtttctggggccggactgattg |
491 |
Q |
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| T |
28489924 |
aagtcgggaaagacttccaccgtcacagcccccgacacctggtctggccgtttctggggccggactgattg |
28489994 |
T |
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