View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_low_15 (Length: 484)

Name: NF11894_low_15
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_low_15
NF11894_low_15
[»] chr8 (26 HSPs)
chr8 (105-323)||(17609841-17610059)
chr8 (3-105)||(35181600-35181709)
chr8 (3-104)||(10678060-10678168)
chr8 (3-106)||(34304872-34304981)
chr8 (3-84)||(18066653-18066734)
chr8 (7-84)||(33629928-33630005)
chr8 (7-76)||(19386508-19386577)
chr8 (3-84)||(16358768-16358849)
chr8 (3-104)||(16603535-16603642)
chr8 (39-84)||(2547116-2547161)
chr8 (391-428)||(3112369-3112406)
chr8 (39-84)||(29705482-29705527)
chr8 (39-84)||(29800885-29800930)
chr8 (385-429)||(32691749-32691793)
chr8 (39-81)||(2165901-2165943)
chr8 (378-444)||(31681832-31681898)
chr8 (39-84)||(11582886-11582931)
chr8 (39-84)||(20148880-20148925)
chr8 (39-84)||(30912497-30912542)
chr8 (39-84)||(36743418-36743463)
chr8 (39-84)||(42197370-42197415)
chr8 (39-84)||(42295314-42295359)
chr8 (39-84)||(45397436-45397481)
chr8 (39-83)||(5755023-5755067)
chr8 (41-84)||(16383404-16383448)
chr8 (386-442)||(28203945-28204001)
[»] chr1 (26 HSPs)
chr1 (3-107)||(44112761-44112872)
chr1 (3-104)||(45705909-45706017)
chr1 (3-84)||(35003378-35003459)
chr1 (3-84)||(48119712-48119793)
chr1 (6-104)||(45639640-45639745)
chr1 (3-104)||(35000021-35000129)
chr1 (3-84)||(46168467-46168548)
chr1 (3-109)||(38336002-38336115)
chr1 (6-107)||(26585549-26585657)
chr1 (3-81)||(38113133-38113211)
chr1 (3-84)||(45427680-45427761)
chr1 (3-84)||(41065237-41065316)
chr1 (39-84)||(7447945-7447990)
chr1 (39-84)||(23989458-23989503)
chr1 (39-84)||(50448195-50448240)
chr1 (376-424)||(373058-373106)
chr1 (40-84)||(4401449-4401493)
chr1 (42-84)||(5959030-5959073)
chr1 (373-444)||(31667416-31667487)
chr1 (42-84)||(750240-750282)
chr1 (385-443)||(26462654-26462712)
chr1 (39-84)||(5489896-5489941)
chr1 (381-458)||(6557263-6557340)
chr1 (39-84)||(43571021-43571066)
chr1 (39-84)||(48498897-48498942)
chr1 (41-84)||(50591029-50591073)
[»] chr4 (31 HSPs)
chr4 (3-106)||(17619058-17619168)
chr4 (3-104)||(55272284-55272392)
chr4 (6-105)||(19880041-19880147)
chr4 (6-84)||(712047-712125)
chr4 (3-84)||(38851597-38851678)
chr4 (3-103)||(35037089-35037195)
chr4 (8-81)||(960808-960881)
chr4 (3-104)||(36004027-36004132)
chr4 (6-81)||(48435517-48435592)
chr4 (6-107)||(32728444-32728552)
chr4 (6-107)||(46827611-46827719)
chr4 (31-105)||(3756159-3756240)
chr4 (385-446)||(9988708-9988769)
chr4 (46-105)||(56215805-56215871)
chr4 (39-84)||(27893777-27893822)
chr4 (39-84)||(28982757-28982802)
chr4 (39-84)||(33703261-33703306)
chr4 (385-428)||(683059-683102)
chr4 (387-430)||(8457930-8457973)
chr4 (39-85)||(41327477-41327523)
chr4 (42-84)||(48463385-48463427)
chr4 (39-84)||(1771201-1771246)
chr4 (39-84)||(27550429-27550474)
chr4 (39-84)||(35017852-35017897)
chr4 (370-419)||(40224492-40224541)
chr4 (43-84)||(41848095-41848136)
chr4 (39-84)||(55966281-55966326)
chr4 (391-435)||(2976694-2976738)
chr4 (41-84)||(17983772-17983816)
chr4 (385-429)||(45615424-45615468)
chr4 (41-84)||(55079743-55079787)
[»] chr3 (25 HSPs)
chr3 (3-104)||(9434208-9434316)
chr3 (3-84)||(4190200-4190281)
chr3 (3-84)||(10457827-10457908)
chr3 (3-84)||(34791913-34791994)
chr3 (3-104)||(51757677-51757784)
chr3 (3-81)||(25996352-25996430)
chr3 (6-84)||(52627912-52627990)
chr3 (385-456)||(19323457-19323528)
chr3 (39-84)||(19148888-19148933)
chr3 (39-84)||(55191433-55191478)
chr3 (49-84)||(54429200-54429235)
chr3 (42-107)||(11064627-11064699)
chr3 (42-84)||(47190961-47191003)
chr3 (409-458)||(21768583-21768632)
chr3 (39-84)||(40808985-40809030)
chr3 (39-84)||(53581793-53581838)
chr3 (372-436)||(1502573-1502637)
chr3 (372-424)||(23271990-23272042)
chr3 (39-83)||(40480869-40480913)
chr3 (385-439)||(19730218-19730272)
chr3 (39-84)||(1078338-1078383)
chr3 (385-434)||(19750808-19750857)
chr3 (39-84)||(24688337-24688382)
chr3 (39-84)||(36150250-36150295)
chr3 (47-84)||(52629956-52629993)
[»] chr5 (18 HSPs)
chr5 (3-84)||(32473329-32473410)
chr5 (3-104)||(30622627-30622735)
chr5 (3-81)||(17208158-17208236)
chr5 (39-84)||(5257115-5257160)
chr5 (43-84)||(7617257-7617298)
chr5 (39-84)||(25914931-25914976)
chr5 (391-443)||(2039864-2039916)
chr5 (385-429)||(7512205-7512249)
chr5 (39-84)||(2614584-2614629)
chr5 (391-428)||(7512450-7512487)
chr5 (372-413)||(10948654-10948695)
chr5 (39-84)||(22512425-22512470)
chr5 (39-84)||(33801589-33801634)
chr5 (39-84)||(41334598-41334643)
chr5 (41-84)||(2252197-2252241)
chr5 (41-84)||(3921294-3921338)
chr5 (385-457)||(28322219-28322291)
chr5 (400-444)||(31676863-31676907)
[»] chr2 (30 HSPs)
chr2 (3-84)||(12531598-12531679)
chr2 (3-107)||(41281879-41281990)
chr2 (6-84)||(11825589-11825667)
chr2 (6-107)||(34895646-34895754)
chr2 (3-104)||(43114641-43114749)
chr2 (3-104)||(12415368-12415476)
chr2 (3-104)||(12427428-12427536)
chr2 (3-107)||(18491789-18491900)
chr2 (6-80)||(966773-966847)
chr2 (3-81)||(16804052-16804130)
chr2 (3-81)||(16843334-16843412)
chr2 (3-84)||(4451885-4451966)
chr2 (6-104)||(4299328-4299433)
chr2 (6-81)||(14285763-14285838)
chr2 (35-107)||(6518399-6518478)
chr2 (46-84)||(42026896-42026934)
chr2 (39-84)||(4764661-4764706)
chr2 (39-84)||(16096868-16096913)
chr2 (376-437)||(22131254-22131315)
chr2 (39-84)||(30838752-30838797)
chr2 (39-84)||(42849794-42849839)
chr2 (388-444)||(32843704-32843760)
chr2 (369-424)||(26787731-26787786)
chr2 (39-84)||(34817711-34817756)
chr2 (377-442)||(39459777-39459842)
chr2 (39-84)||(43335698-43335743)
chr2 (39-84)||(43490336-43490381)
chr2 (41-84)||(2997516-2997560)
chr2 (372-424)||(34006826-34006878)
chr2 (389-428)||(44443093-44443133)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-106)||(45625-45735)
[»] chr6 (24 HSPs)
chr6 (3-106)||(27441626-27441736)
chr6 (6-104)||(33242490-33242595)
chr6 (11-84)||(31109157-31109230)
chr6 (17-105)||(33254012-33254107)
chr6 (372-428)||(10335372-10335428)
chr6 (385-424)||(6284670-6284709)
chr6 (39-84)||(7367669-7367714)
chr6 (39-84)||(26669944-26669989)
chr6 (385-434)||(29449682-29449731)
chr6 (391-443)||(13211296-13211348)
chr6 (378-444)||(1960330-1960397)
chr6 (389-444)||(10760855-10760909)
chr6 (39-84)||(3213520-3213565)
chr6 (39-84)||(9698268-9698313)
chr6 (370-435)||(10522937-10523002)
chr6 (385-446)||(18803236-18803297)
chr6 (39-84)||(21280049-21280094)
chr6 (39-84)||(21293612-21293657)
chr6 (39-84)||(30736102-30736147)
chr6 (380-424)||(10157995-10158039)
chr6 (379-435)||(14707361-14707417)
chr6 (41-84)||(15508053-15508097)
chr6 (41-84)||(15990071-15990115)
chr6 (41-84)||(30341389-30341433)
[»] chr7 (29 HSPs)
chr7 (3-112)||(31408533-31408649)
chr7 (3-107)||(31513371-31513482)
chr7 (3-105)||(40237003-40237112)
chr7 (7-84)||(27535166-27535243)
chr7 (6-81)||(33384958-33385033)
chr7 (39-104)||(43317563-43317635)
chr7 (39-84)||(38160514-38160559)
chr7 (39-84)||(5015515-5015560)
chr7 (39-84)||(5194166-5194211)
chr7 (39-84)||(16180292-16180337)
chr7 (39-84)||(32029752-32029797)
chr7 (39-84)||(42972972-42973017)
chr7 (385-428)||(37775989-37776032)
chr7 (39-81)||(9216421-9216463)
chr7 (386-444)||(18750867-18750925)
chr7 (42-84)||(26898337-26898379)
chr7 (39-84)||(5810859-5810904)
chr7 (385-426)||(10893356-10893397)
chr7 (385-426)||(10893878-10893919)
chr7 (39-84)||(24000947-24000992)
chr7 (370-435)||(39582879-39582944)
chr7 (39-84)||(41861796-41861841)
chr7 (39-84)||(42538366-42538411)
chr7 (39-84)||(43343559-43343604)
chr7 (39-84)||(44326298-44326343)
chr7 (39-84)||(44416869-44416914)
chr7 (389-429)||(12843047-12843087)
chr7 (41-84)||(32564455-32564499)
chr7 (380-428)||(43160491-43160539)
[»] scaffold0100 (1 HSPs)
scaffold0100 (3-84)||(35391-35472)
[»] scaffold0119 (1 HSPs)
scaffold0119 (39-84)||(805-850)
[»] scaffold0187 (2 HSPs)
scaffold0187 (39-84)||(14124-14169)
scaffold0187 (39-84)||(24452-24497)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 105 - 323
Target Start/End: Original strand, 17609841 - 17610059
Alignment:
Q  105 tttcaataacacagcaacaacaacgcgatgccgtaaacctcaaacaatgcattatccaaaatctacagtgtctttcctcgtagcacgcgccaagaactct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17609841 tttcaataacacagcaacaacaacgcgatgccgtaaacctcaaacaatgcattatccaaaatctacagtgtctttcctcgtagcacgcgccaagaactct 17609940  T
Q  205 gttcaacttcttcgtcacaacaacaattcacgctcactattgttctactttcaaccttcgctttcttctttttcatccaatgctcaactctcatatgatc 304  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17609941 gttcaacttcttcgtcacaacaataattcacgctcactcttgttctactttcaaccttcgctttcttctttttcatccaatgctcaactctcatatgatc 17610040  T
Q  305 atgatgatcaggtttattc 323  Q
    |||||||||||||||||||    
T  17610041 atgatgatcaggtttattc 17610059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 35181600 - 35181709
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||    
T  35181600 aaccatactttctctttcatctcctctcacttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgta 35181699  T
Q  96 tcaccactct 105  Q
    ||||||||||    
T  35181700 tcaccactct 35181709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 10678168 - 10678060
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||       |||||||||||    
T  10678168 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgggggtgtacatgta 10678069  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  10678068 tcaccactc 10678060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 34304872 - 34304981
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca------gtgtacatgtat 96  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||      ||||||||||||    
T  34304872 aaccatactttctctttcatctcctctcacttttccttgccacatgtcaggattttgtttgggtgtaagaggtgtattgccacatggggtgtacatgtat 34304971  T
Q  97 caccactctt 106  Q
    ||||||||||    
T  34304972 caccactctt 34304981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 18066734 - 18066653
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18066734 aaccatactttctctttcatctcctctccattttccttgccacatgtcagaattttatgtgggtgtaagaggtgtattgcca 18066653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 33630005 - 33629928
Alignment:
Q  7 atactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||    
T  33630005 atactttctctttcatctcctctcccttttctttgccacatgtcaaaattttgtgtaggtgtaagaggtgtattgcca 33629928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 19386577 - 19386508
Alignment:
Q  7 atactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19386577 atactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtatgaggtg 19386508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 16358849 - 16358768
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||  ||||| ||||||| |||||||||||||||||    
T  16358849 aaccatactttctttttcatctcctctccctttttcttgccacatgtcatgattttatgtgggtataagaggtgtattgcca 16358768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 16603642 - 16603535
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca------gtgtacatgtat 96  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||  ||||||||||      ||||||||||||    
T  16603642 aaccatacttactctttcatctcctctcccttttccttgccacatgtcaggattttatgtaggtgcaagaaatgtattgccatatggggtgtacatgtat 16603543  T
Q  97 caccactc 104  Q
    ||||||||    
T  16603542 caccactc 16603535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 2547116 - 2547161
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  2547116 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 2547161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 3112369 - 3112406
Alignment:
Q  391 tgattaaattcaatcatgtcattttctcaaattactac 428  Q
    |||||||||||||| |||||||||||||||||||||||    
T  3112369 tgattaaattcaataatgtcattttctcaaattactac 3112406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 29705482 - 29705527
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  29705482 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 29705527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 29800930 - 29800885
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||    
T  29800930 ttgccacatgtcagaattttatgtgggtgtaaagggtgtattgcca 29800885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 32691793 - 32691749
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactacc 429  Q
    |||||||||||| ||||||| |||||||||||| |||||||||||    
T  32691793 cacatgtgattacattcaattatgtcattttcttaaattactacc 32691749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 2165943 - 2165901
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    ||||||| ||||||||||||||||||||||||  |||||||||    
T  2165943 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattg 2165901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 31681832 - 31681898
Alignment:
Q  378 acaccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtca 444  Q
    |||||| |||||||||||  ||||||| |||||||||||| ||||||||| | | |||||| |||||    
T  31681832 acaccgacacatgtgatttcattcaattatgtcattttcttaaattactagcgacgtcgacatgtca 31681898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 11582886 - 11582931
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  11582886 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 11582931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 20148880 - 20148925
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  20148880 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgcca 20148925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 30912542 - 30912497
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||   |||||||||||    
T  30912542 ttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgcca 30912497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 36743463 - 36743418
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  36743463 ttgccacgtgtcagaattttgtatgggtgtaaatggtgtattgcca 36743418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 42197415 - 42197370
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||| ||||||||||||||||||  ||||||||||||    
T  42197415 ttgccacgtgtcaaaattttgtgtgggtgtaaagggtgtattgcca 42197370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 42295314 - 42295359
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||| |||||  ||| ||||||||    
T  42295314 ttgccacatgtcagaattttgtgtggatgtaaagggtatattgcca 42295359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 45397436 - 45397481
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||| ||||||    
T  45397436 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtgttgcca 45397481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 5755023 - 5755067
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc 83  Q
    ||||||| ||| ||||||||||||||||||||  |||||||||||    
T  5755023 ttgccacgtgttagaattttgtgtgggtgtaaagggtgtattgcc 5755067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 16383448 - 16383404
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  16383448 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 16383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 28203945 - 28204001
Alignment:
Q  386 acatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgt 442  Q
    |||||| |||| |||||||| | ||||||| ||||||||||| || |||||||||||    
T  28203945 acatgtaattacattcaatcgtatcattttttcaaattactatcagtgtcgacgtgt 28204001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 44112761 - 44112872
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  44112761 aaccatactttctctttcatctcctctcacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgta 44112860  T
Q  96 tcaccactcttt 107  Q
    ||||||||||||    
T  44112861 tcaccactcttt 44112872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 45705909 - 45706017
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||    
T  45705909 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgta 45706008  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  45706009 tcaccactc 45706017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 35003378 - 35003459
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35003378 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgcca 35003459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 48119712 - 48119793
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48119712 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgcca 48119793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 45639745 - 45639640
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||       ||||||||||||||    
T  45639745 catactttctctttcatctcctctcccttttccttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccacaagggggtgtacatgtatca 45639646  T
Q  99 ccactc 104  Q
    ||||||    
T  45639645 ccactc 45639640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 35000129 - 35000021
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||       |||||||||||    
T  35000129 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtatgggtgtaagagatgtattgccacatgggggtgtacatgta 35000030  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  35000029 tcaccactc 35000021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 46168467 - 46168548
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  46168467 aaccatactttctctttcatctcctctccctttttcttgccacatgtcataattttgtgtgggtgtaagagatgtattgcca 46168548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 38336002 - 38336115
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||||       ||||||| |||    
T  38336002 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgaatataagaggtgtattgccacataggggtgtacaagta 38336101  T
Q  96 tcaccactctttca 109  Q
    ||||||||||||||    
T  38336102 tcaccactctttca 38336115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 26585549 - 26585657
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc-------agtgtacatgtatca 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||        ||||||||||||||    
T  26585549 catactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagagatgtattgccgcatgggggtgtacatgtatca 26585648  T
Q  99 ccactcttt 107  Q
    |||||||||    
T  26585649 ccactcttt 26585657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 38113211 - 38113133
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  38113211 aaccatacttactctttcatctcctctcccttttctttgccacatgtcaggattttgtgtgggtgtaagaggtgtattg 38113133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 45427761 - 45427680
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||    
T  45427761 aaccatactttctctttcatctcctctcccttttccttaccacatgtcaggattttgtgtggatggaagaggtgtattgcca 45427680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 41065237 - 41065316
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||| |||||||  |||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  41065237 aaccatactttctctttcctctcctc--ccttttccttgccacatgtcaggattttgtgcggatgtaagaggtgtattgcca 41065316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 7447945 - 7447990
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  7447945 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 7447990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 23989503 - 23989458
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||    
T  23989503 ttgccacatgtcagaatcttgtgtgggtgtaaagggtgtattgcca 23989458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 50448240 - 50448195
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  50448240 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 50448195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 373106 - 373058
Alignment:
Q  376 caacaccggcacatgtgattaaattcaatcatgtcattttctcaaatta 424  Q
    |||||||| ||||| |||||||| | |||||||||||||||||||||||    
T  373106 caacaccgacacatatgattaaactaaatcatgtcattttctcaaatta 373058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 4401449 - 4401493
Alignment:
Q  40 tgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||| ||||||||||||||||||||||||  ||||||||||||    
T  4401449 tgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 4401493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 5959030 - 5959073
Alignment:
Q  42 ccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    |||||||||||| |||||||||||||| ||||||||||||||||    
T  5959030 ccacatgtcagatttttgtgtgggtgtcaagaggtgtattgcca 5959073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 444
Target Start/End: Complemental strand, 31667487 - 31667416
Alignment:
Q  373 gtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtca 444  Q
    |||| |||||| |||||||||||| ||| ||| |||||||||||| |||||| ||||| ||| ||| |||||    
T  31667487 gtccgacaccgacacatgtgattacatttaattatgtcattttctaaaattattaccagtgttgacatgtca 31667416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 750282 - 750240
Alignment:
Q  42 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||| ||||||||||||||||||||||||  ||||||||||||    
T  750282 ccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 750240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 26462654 - 26462712
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtc 443  Q
    |||||||||||| ||||||| || ||||||||| |||||| || || ||||||||||||    
T  26462654 cacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtc 26462712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 5489896 - 5489941
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  5489896 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgcca 5489941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 6557263 - 6557340
Alignment:
Q  381 ccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtcaatatcgtgtccggt 458  Q
    ||||||||||| || | ||||||| ||||||||||||||||| | ||||| |||||| | |||| | |||| ||||||    
T  6557263 ccggcacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtcgtatccggt 6557340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 43571066 - 43571021
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  43571066 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgcca 43571021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 48498942 - 48498897
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  48498942 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgcca 48498897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 50591029 - 50591073
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  50591029 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 50591073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 17619168 - 17619058
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccag-------tgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||    
T  17619168 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccaggtggggatgtacatgta 17619069  T
Q  96 tcaccactctt 106  Q
    |||||||||||    
T  17619068 tcaccactctt 17619058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 55272392 - 55272284
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||    
T  55272392 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgta 55272293  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  55272292 tcaccactc 55272284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 19880041 - 19880147
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatca 98  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||    
T  19880041 catactttctctttcatctcctttcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatca 19880140  T
Q  99 ccactct 105  Q
    |||||||    
T  19880141 ccactct 19880147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 712047 - 712125
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  712047 catactttctctttcatctcctcttccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgcca 712125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 38851597 - 38851678
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  38851597 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagagatgtattgcca 38851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 35037089 - 35037195
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc------agtgtacatgtat 96  Q
    ||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||||||||||||    
T  35037089 aaccatattttttctttcttctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggagtgtacatgtat 35037188  T
Q  97 caccact 103  Q
    |||||||    
T  35037189 caccact 35037195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 960881 - 960808
Alignment:
Q  8 tactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  960881 tactttctctttcatctcctatcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattg 960808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 36004132 - 36004027
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca----gtgtacatgtatca 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||| ||||||||||    | ||||||||||||    
T  36004132 aaccatactttctctttcatctcctctcccttttccttgccacatatcaaaattttgtttgagtgtaagagatgtattgccacatggggtacatgtatca 36004033  T
Q  99 ccactc 104  Q
    ||||||    
T  36004032 ccactc 36004027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 48435592 - 48435517
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  48435592 catactttatctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagagatgtattg 48435517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 32728444 - 32728552
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatca 98  Q
    |||||||||||||||||||||||||||||||||||||||||| | |  ||||| |||| ||||||||||||||||||||       ||||||||||||||    
T  32728444 catactttctctttcatctcctctcccttttccttgccacatattaagattttttgtgcgtgtaagaggtgtattgccacatgggggtgtacatgtatca 32728543  T
Q  99 ccactcttt 107  Q
    |||||||||    
T  32728544 ccactcttt 32728552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 46827719 - 46827611
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatca 98  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |||       ||||||||||||||    
T  46827719 catattttctctttcatctcccctccctttttcttgccacatgtcaggattttgtgtgggtgtaagagatgtatttccacatggaggtgtacatgtatca 46827620  T
Q  99 ccactcttt 107  Q
    |||||||||    
T  46827619 ccactcttt 46827611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 3756240 - 3756159
Alignment:
Q  31 ccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc-------agtgtacatgtatcaccactct 105  Q
    |||||||||||||||||||||  ||||| |||||||||||||| |||||||||       ||||||||||||||||||||||    
T  3756240 ccttttccttgccacatgtcatgattttatgtgggtgtaagagttgtattgccacatgggagtgtacatgtatcaccactct 3756159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 9988708 - 9988769
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtcaat 446  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||  ||| |||||||||||    
T  9988708 cacatgtgattacattcaattatgtcattttctcaaataactacctgtgtggacgtgtcaat 9988769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 56215871 - 56215805
Alignment:
Q  46 atgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatcaccactct 105  Q
    |||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||    
T  56215871 atgtcagaattttgtgtgggtgtaagaggtgtatggccacatggtggtgtacatgtatcaccactct 56215805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 27893822 - 27893777
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||    
T  27893822 ttgccacatgtcagaattttatgtgggtgtaaagggtgtattgcca 27893777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 28982802 - 28982757
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||    
T  28982802 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgcca 28982757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 33703261 - 33703306
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  33703261 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 33703306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 683102 - 683059
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactac 428  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||    
T  683102 cacatgtgattacattcaattatgtcattttctcaaattcctac 683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 8457973 - 8457930
Alignment:
Q  387 catgtgattaaattcaatcatgtcattttctcaaattactacca 430  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||    
T  8457973 catgtgattacattcaattatgtcattttctcaaattattacca 8457930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 41327523 - 41327477
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccag 85  Q
    ||||||||||| |||||||| |||| ||||||| |||||||||||||    
T  41327523 ttgccacatgttagaattttttgtgagtgtaaggggtgtattgccag 41327477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 48463427 - 48463385
Alignment:
Q  42 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||| |||||||||||  ||||||||||||    
T  48463427 ccacatgtcagaattttatgtgggtgtaaagggtgtattgcca 48463385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 1771246 - 1771201
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| | ||||||||||||||||||||||  ||||||||||||    
T  1771246 ttgccacgtctcagaattttgtgtgggtgtaaagggtgtattgcca 1771201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 27550429 - 27550474
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  27550429 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 27550474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 35017852 - 35017897
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| ||||| || ||||||||||    
T  35017852 ttgccacgtgtcagaattttgtgtggatgtaaaagatgtattgcca 35017897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 40224492 - 40224541
Alignment:
Q  370 catgtccaacaccggcacatgtgattaaattcaatcatgtcattttctca 419  Q
    |||||||||||||| ||||| |||||| ||| ||| ||||||||||||||    
T  40224492 catgtccaacaccgacacatatgattacattaaattatgtcattttctca 40224541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 41848095 - 41848136
Alignment:
Q  43 cacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  41848095 cacatgtcagaattttgcgtggatgtaaggggtgtattgcca 41848136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 55966326 - 55966281
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  55966326 ttgccacctgtcagaattttatgtgggtgtaaagggtgtattgcca 55966281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 2976738 - 2976694
Alignment:
Q  391 tgattaaattcaatcatgtcattttctcaaattactaccaatgtc 435  Q
    |||||| ||||||| ||||||||||||||||||| |||| |||||    
T  2976738 tgattacattcaattatgtcattttctcaaattattacccatgtc 2976694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 17983772 - 17983816
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  17983772 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 17983816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 429
Target Start/End: Original strand, 45615424 - 45615468
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactacc 429  Q
    ||||||||||||  |||||| |||||||||||| |||||||||||    
T  45615424 cacatgtgattacgttcaattatgtcattttcttaaattactacc 45615468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 55079743 - 55079787
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  55079743 gccacatgtcagatttttgtatgggtgtcaagaggtgtattgcca 55079787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 9434208 - 9434316
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc-------agtgtacatgta 95  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  9434208 aaccatactttctctttcatctcctctcacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgggagtgtacatgta 9434307  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  9434308 tcaccactc 9434316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 4190281 - 4190200
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4190281 aaccatactttctctttcatctcctttcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgcca 4190200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 10457908 - 10457827
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  10457908 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgcca 10457827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 34791913 - 34791994
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  34791913 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgcca 34791994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 51757677 - 51757784
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca------gtgtacatgtat 96  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||      ||||||||||||    
T  51757677 aaccatactttctctttcatctcctcttccttttccttgccacatgtcaggattgtgtgtgggtgtaagaggtatattgccacatggggtgtacatgtat 51757776  T
Q  97 caccactc 104  Q
    ||||||||    
T  51757777 caccactc 51757784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 25996352 - 25996430
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  25996352 aaccatattttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtttaagaggtatattg 25996430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 52627990 - 52627912
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| | ||| |||||||||||||||||    
T  52627990 catactttctctttcatcttctctcccttttcctggccacatgtcaggattttgtataggtataagaggtgtattgcca 52627912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 456
Target Start/End: Original strand, 19323457 - 19323528
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtcaatatcgtgtccg 456  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||| | | |||||||||    
T  19323457 cacatgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgacatgttagtgtcgtgtccg 19323528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 19148888 - 19148933
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||    
T  19148888 ttgccatatgtcagaattttgtgtgggtgtaagtggtgtattgcca 19148933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 55191478 - 55191433
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||    
T  55191478 ttgcaacatgtcagaattttgtgtgagtgtaagaggtgtattgcca 55191433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 54429235 - 54429200
Alignment:
Q  49 tcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  54429235 tcagaattttgtgtgggtgtaagaggtgtattgcca 54429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 11064699 - 11064627
Alignment:
Q  42 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc-------agtgtacatgtatcaccactcttt 107  Q
    |||||||||| ||||||||||||||||||| ||||||||| |       ||||||||||||||||||||||||    
T  11064699 ccacatgtcaaaattttgtgtgggtgtaaggggtgtattgtcacacaagagtgtacatgtatcaccactcttt 11064627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 47191003 - 47190961
Alignment:
Q  42 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  47191003 ccacatgtcagaattttgtgtgggtgtaaagggtgtattgcca 47190961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 21768632 - 21768583
Alignment:
Q  409 tcattttctcaaattactaccaatgtcgacgtgtcaatatcgtgtccggt 458  Q
    |||||||||||||||| ||||| | ||||||||||||| |||||||||||    
T  21768632 tcattttctcaaattattaccagtatcgacgtgtcaatgtcgtgtccggt 21768583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 40808985 - 40809030
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||    
T  40808985 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgcca 40809030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 53581838 - 53581793
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  53581838 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 53581793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 1502637 - 1502573
Alignment:
Q  372 tgtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcg 436  Q
    |||||||||| | |||||||||||| ||||||| |||||||||||| | |||| ||||| |||||    
T  1502637 tgtccaacacagacacatgtgattacattcaattatgtcattttcttagattattaccagtgtcg 1502573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 23271990 - 23272042
Alignment:
Q  372 tgtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaatta 424  Q
    |||||||||||| ||||| |||||| ||||||| |||||| ||||||||||||    
T  23271990 tgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 40480869 - 40480913
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc 83  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||    
T  40480869 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcc 40480913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 19730218 - 19730272
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacg 439  Q
    |||||||||| | ||||||| ||||||||||||||||||| || |||||| ||||    
T  19730218 cacatgtgatcacattcaattatgtcattttctcaaattattaacaatgttgacg 19730272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 1078338 - 1078383
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||    
T  1078338 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgcca 1078383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 19750808 - 19750857
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgt 434  Q
    |||||||||| | ||||||| ||||||||||||||||||| || ||||||    
T  19750808 cacatgtgatcacattcaattatgtcattttctcaaattattaacaatgt 19750857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 24688382 - 24688337
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||| ||||  ||||||||||||    
T  24688382 ttgccacgtgtcagaattttgtgtgggggtaaatggtgtattgcca 24688337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 36150250 - 36150295
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||    
T  36150250 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgcca 36150295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 52629956 - 52629993
Alignment:
Q  47 tgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  52629956 tgtcagaattttgtgtgggtgtaaagggtgtattgcca 52629993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 32473410 - 32473329
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32473410 aaccatactttctctttcatctcctctcccttttctttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 32473329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 30622735 - 30622627
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||    
T  30622735 aaccatactttctctttcatctcctctctcttttccttgccacatgtcaaaattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgta 30622636  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  30622635 tcaccactc 30622627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 17208158 - 17208236
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  17208158 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 17208236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 5257115 - 5257160
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||    
T  5257115 ttgccacatgtcagaattttatgtgggtgtaaagggtgtattgcca 5257160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 7617257 - 7617298
Alignment:
Q  43 cacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  7617257 cacatgtcagaattttgtgttggtgtaaaaggtgtattgcca 7617298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 25914976 - 25914931
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  25914976 ttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgcca 25914931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 2039864 - 2039916
Alignment:
Q  391 tgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtc 443  Q
    |||||| ||| ||||||||||||||||||||||| ||||  ||||||||||||    
T  2039864 tgattacattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtc 2039916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 7512249 - 7512205
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactacc 429  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||    
T  7512249 cacatctgattacattcaataatgtcattttctcaaattactacc 7512205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 2614629 - 2614584
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  2614629 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 2614584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 7512487 - 7512450
Alignment:
Q  391 tgattaaattcaatcatgtcattttctcaaattactac 428  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  7512487 tgattacattcaataatgtcattttctcaaattactac 7512450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 10948654 - 10948695
Alignment:
Q  372 tgtccaacaccggcacatgtgattaaattcaatcatgtcatt 413  Q
    |||||||||||| |||||||||||| ||| ||||||||||||    
T  10948654 tgtccaacaccgacacatgtgattacatttaatcatgtcatt 10948695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 22512425 - 22512470
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||    
T  22512425 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgcca 22512470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 33801589 - 33801634
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||   |||||||||||    
T  33801589 ttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgcca 33801634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 41334643 - 41334598
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  41334643 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 41334598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 2252197 - 2252241
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  2252197 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 2252241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 3921294 - 3921338
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  3921294 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 3921338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 28322291 - 28322219
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtcaatatcgtgtccgg 457  Q
    |||||||||||| ||||||| |  ||||||||||||||||  || | ||||||||||| | |||||| |||||    
T  28322291 cacatgtgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgttattatcgtatccgg 28322219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 31676863 - 31676907
Alignment:
Q  400 tcaatcatgtcattttctcaaattactaccaatgtcgacgtgtca 444  Q
    ||||| ||||||||||||||||||||||||  |||| ||||||||    
T  31676863 tcaattatgtcattttctcaaattactaccggtgtcaacgtgtca 31676907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 12531679 - 12531598
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12531679 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgcca 12531598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 41281990 - 41281879
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||    
T  41281990 aaccatactttctctttcatctcctctcacttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgta 41281891  T
Q  96 tcaccactcttt 107  Q
    ||||||||||||    
T  41281890 tcaccactcttt 41281879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 11825667 - 11825589
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11825667 catactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgcca 11825589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 34895754 - 34895646
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatca 98  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||    
T  34895754 catactttatctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatca 34895655  T
Q  99 ccactcttt 107  Q
    |||||||||    
T  34895654 ccactcttt 34895646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 43114641 - 43114749
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||       |||||||||||    
T  43114641 aaccatactttctctttcatctcctctcccttttccttgccacttgtcaggattttgtgtgggtgtaagaggtgtattgccacatgagggtgtacatgta 43114740  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  43114741 tcaccactc 43114749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 12415476 - 12415368
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc-------agtgtacatgta 95  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||       ||||||||||||    
T  12415476 aaccatactttctctttcatctcctctcccttttctttgctacatgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgta 12415377  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  12415376 tcaccactc 12415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 12427536 - 12427428
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcc-------agtgtacatgta 95  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||       ||||||||||||    
T  12427536 aaccatactttctctttcatctcctctcccttttctttgctacatgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgta 12427437  T
Q  96 tcaccactc 104  Q
    |||||||||    
T  12427436 tcaccactc 12427428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 18491789 - 18491900
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||       |||||||||||    
T  18491789 aaccatacttactctttcatctcctatcccttttccttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgta 18491888  T
Q  96 tcaccactcttt 107  Q
    ||||||||||||    
T  18491889 tcaccactcttt 18491900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 966847 - 966773
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtatt 80  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  966847 catactttctctttcatctcccctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtatt 966773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 16804052 - 16804130
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16804052 aaccatactttctctttcatctcttcacacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 16804130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 16843334 - 16843412
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16843334 aaccatactttctctttcatctcttcacacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 16843412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 4451966 - 4451885
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||    
T  4451966 aaccatactttctctttcatctcctctcccttttccttcccacatgtcaggattttgtgtgggtgtaagaagtatattgcca 4451885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 4299433 - 4299328
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatca 98  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||       ||||||||||||||    
T  4299433 catacttactctttaatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgaaggtgtacatgtatca 4299334  T
Q  99 ccactc 104  Q
    ||||||    
T  4299333 ccactc 4299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 14285763 - 14285838
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||    
T  14285763 catactttctctttcatctcctctcccttttccttaccacatgtgaggattttatgtgggtgtaagaggtgtattg 14285838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 6518478 - 6518399
Alignment:
Q  35 ttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatcaccactcttt 107  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||| ||       |||||||||||||||||||||||    
T  6518478 ttccttgccacatgtcaggattttgtgtgggtgtaaaaggtgtattgacacatggaggtgtacatgtatcaccactcttt 6518399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 42026896 - 42026934
Alignment:
Q  46 atgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  42026896 atgtcagaattttgtgtgggtgtaaggggtgtattgcca 42026934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 4764706 - 4764661
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||    
T  4764706 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgcca 4764661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 16096868 - 16096913
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  16096868 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 16096913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 22131254 - 22131315
Alignment:
Q  376 caacaccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcga 437  Q
    |||||||| |||||||||||| ||| ||  |||||||||||||||||||||| || ||||||    
T  22131254 caacaccgacacatgtgattacattgaacaatgtcattttctcaaattactatcagtgtcga 22131315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 30838752 - 30838797
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||    
T  30838752 ttgccacgtgtcagaattttgtgtaggtgtaaaaggtgtattgcca 30838797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 42849839 - 42849794
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  42849839 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 42849794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 32843760 - 32843704
Alignment:
Q  388 atgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtca 444  Q
    ||||||||| ||||||| |||||||||||||| |||||||||| | |||| ||||||    
T  32843760 atgtgattacattcaattatgtcattttctcatattactaccagtatcgatgtgtca 32843704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 26787731 - 26787786
Alignment:
Q  369 acatgtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaatta 424  Q
    ||||| |||||| || |||||||||||| ||||||| ||||||||||| |||||||    
T  26787731 acatgaccaacaacgacacatgtgattacattcaataatgtcattttcgcaaatta 26787786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 34817756 - 34817711
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||||||||||||||||||||| |||||||||| || | |||||||    
T  34817756 ttgccacatgtcagaattttgtatgggtgtaaggggagcattgcca 34817711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 39459842 - 39459777
Alignment:
Q  377 aacaccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgt 442  Q
    ||||||| ||| |||||||| ||||||| |  |||||| || |||||| |||||||||||||||||    
T  39459842 aacaccgacacgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 39459777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 43335743 - 43335698
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| ||||| |||| ||||||||    
T  43335743 ttgccacgtgtcagaattttgtgtggatgtaaaaggtatattgcca 43335698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 43490381 - 43490336
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  43490381 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 43490336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 2997516 - 2997560
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  2997516 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 2997560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 34006878 - 34006826
Alignment:
Q  372 tgtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaatta 424  Q
    |||||||||||| |||||||||||| ||||||| || |||||| || ||||||    
T  34006878 tgtccaacaccgacacatgtgattatattcaattatatcatttactaaaatta 34006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 44443133 - 44443093
Alignment:
Q  389 tgtgattaaattcaatcatgtca-ttttctcaaattactac 428  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  44443133 tgtgattacattcaatcatgtcatttttctcaaattactac 44443093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 45735 - 45625
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||       |||||||||||    
T  45735 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgta 45636  T
Q  96 tcaccactctt 106  Q
    |||||||||||    
T  45635 tcaccactctt 45625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 27441626 - 27441736
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||       |||||||||||    
T  27441626 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgta 27441725  T
Q  96 tcaccactctt 106  Q
    |||||||||||    
T  27441726 tcaccactctt 27441736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 33242490 - 33242595
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatca 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||    
T  33242490 catactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatca 33242589  T
Q  99 ccactc 104  Q
    ||||||    
T  33242590 ccactc 33242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 31109230 - 31109157
Alignment:
Q  11 tttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31109230 tttctctttcatctcctctccctcttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgcca 31109157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 33254012 - 33254107
Alignment:
Q  17 tttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatcaccactct 105  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||||||| ||| |||||||||||||       |||||||||||||||||||||    
T  33254012 tttcatctcctctcccttttctttgccacatgtccggattttgtgtgggtataaaaggtgtattgccacatggaggtgtacatgtatcaccactct 33254107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 10335372 - 10335428
Alignment:
Q  372 tgtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaattactac 428  Q
    |||| ||||||| ||||| |||||| ||||||| |||||||||||||||||||||||    
T  10335372 tgtcgaacaccgacacatctgattacattcaattatgtcattttctcaaattactac 10335428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 6284670 - 6284709
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaatta 424  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  6284670 cacatgtgattaaattcaattatgtcattttctcaaatta 6284709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 7367669 - 7367714
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  7367669 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 7367714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 26669989 - 26669944
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  26669989 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 26669944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 29449731 - 29449682
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgt 434  Q
    |||||||||||| ||||||| |||| ||||||| ||||||||||||||||    
T  29449731 cacatgtgattacattcaattatgttattttctgaaattactaccaatgt 29449682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 13211296 - 13211348
Alignment:
Q  391 tgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtc 443  Q
    |||||| ||| ||| ||||||||||||||||||| || |||||||||||||||    
T  13211296 tgattatattaaattatgtcattttctcaaattattatcaatgtcgacgtgtc 13211348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 1960330 - 1960397
Alignment:
Q  378 acaccggcacatgtgattaaattcaatca-tgtcattttctcaaattactaccaatgtcgacgtgtca 444  Q
    |||||||||||||  |||| ||||||||| | ||||||||| |||||||||||||| ||||| |||||    
T  1960330 acaccggcacatgaaattacattcaatcactttcattttcttaaattactaccaatatcgacatgtca 1960397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 10760855 - 10760909
Alignment:
Q  389 tgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtca 444  Q
    |||||||| ||||||| ||||||||||||||||||| || || |||||||||||||    
T  10760855 tgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgacgtgtca 10760909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 3213520 - 3213565
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  3213520 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgcca 3213565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 9698313 - 9698268
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  9698313 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 9698268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 10522937 - 10523002
Alignment:
Q  370 catgtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtc 435  Q
    ||||||||| || | ||||  |||||| ||||||| |||||||||||| |||||||||||| ||||    
T  10522937 catgtccaatacagacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 10523002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 18803297 - 18803236
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtcaat 446  Q
    |||||||||||| ||||||| |||| |||||||||||| | ||||||| || || |||||||    
T  18803297 cacatgtgattacattcaattatgtaattttctcaaataattaccaatatcaacatgtcaat 18803236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 21280049 - 21280094
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||| ||||||||    
T  21280049 ttgccacgtgtcagaattttgtgtgggtgtaaagggtatattgcca 21280094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 21293657 - 21293612
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  21293657 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgcca 21293612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 30736102 - 30736147
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||    
T  30736102 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgcca 30736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  380 accggcacatgtgattaaattcaatcatgtcattttctcaaatta 424  Q
    |||| |||||||||||| ||| ||| |||||||||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 14707361 - 14707417
Alignment:
Q  379 caccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtc 435  Q
    ||||| |||||||| |||  ||||||  |||||||||||||||||||| ||||||||    
T  14707361 caccgacacatgtgtttacgttcaattttgtcattttctcaaattactgccaatgtc 14707417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 15508053 - 15508097
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  15508053 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 15508097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 15990071 - 15990115
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  15990071 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 15990115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 30341389 - 30341433
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  30341389 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 30341433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 31408649 - 31408533
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||       |||||||||||    
T  31408649 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttatgtgggtgtaagaggtgtattgtcacatgggggtgtacatgta 31408550  T
Q  96 tcaccactctttcaata 112  Q
    |||||||||||| ||||    
T  31408549 tcaccactcttttaata 31408533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 31513371 - 31513482
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||       |||||||||||    
T  31513371 aaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtagatgtaagaggtgtattgccacataagggtgtacatgta 31513470  T
Q  96 tcaccactcttt 107  Q
    ||||||||||||    
T  31513471 tcaccactcttt 31513482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 40237003 - 40237112
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgta 95  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||    
T  40237003 aaccatattttctctttcatctcctctcacttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgta 40237102  T
Q  96 tcaccactct 105  Q
    ||||||||||    
T  40237103 tcaccactct 40237112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 27535243 - 27535166
Alignment:
Q  7 atactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  27535243 atactttctctttcatctcctctcctttttccttgccacatgtcagaattttgtgtggatgtaagagatgtattgcca 27535166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 33384958 - 33385033
Alignment:
Q  6 catactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  33384958 catactttctctttcatctcctctcccttttccttgccacatatcaggattttgtatgggtgtaagaggtgtattg 33385033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 43317563 - 43317635
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca-------gtgtacatgtatcaccactc 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||    
T  43317563 ttgccacatgtcagaattttgtgtgggtgtaaggggtgtattgccacacaagggtgtacatgtatcaccactc 43317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 38160559 - 38160514
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  38160559 ttgccacgtgtcagaattttgtgtgggtgtaaggggtgtattgcca 38160514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 5015515 - 5015560
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||    
T  5015515 ttgccacgtgtcagaattttgtgtgagtgtaaaaggtgtattgcca 5015560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 5194211 - 5194166
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||    
T  5194211 ttgccacatgtcaaaattttgtgtgggtgtaagggttgtattgcca 5194166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 16180337 - 16180292
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||    
T  16180337 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgcca 16180292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 32029797 - 32029752
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  32029797 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 32029752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 42972972 - 42973017
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  42972972 ttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgcca 42973017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 37776032 - 37775989
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattactac 428  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||    
T  37776032 cacatgtgattacatttaattatgtcattttctcaaattactac 37775989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 9216421 - 9216463
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattg 81  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||    
T  9216421 ttgccgcatgtcagaattttgtgtggatgtaaaaggtgtattg 9216463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 18750925 - 18750867
Alignment:
Q  386 acatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtcgacgtgtca 444  Q
    ||||||||||| ||||||| |||||||||||| |||||| ||||  |||||| ||||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtca 18750867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 26898379 - 26898337
Alignment:
Q  42 ccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    |||| |||||||||||| ||||||||||| |||||||||||||    
T  26898379 ccacgtgtcagaattttatgtgggtgtaaaaggtgtattgcca 26898337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 5810904 - 5810859
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||||    
T  5810904 ttgccacatgtcaaaattttgtatgggtgtaaagggtgtattgcca 5810859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 10893356 - 10893397
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattact 426  Q
    |||||| ||||| ||||||| |||||||||||||||||||||    
T  10893356 cacatgcgattacattcaattatgtcattttctcaaattact 10893397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 10893878 - 10893919
Alignment:
Q  385 cacatgtgattaaattcaatcatgtcattttctcaaattact 426  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  10893878 cacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 24000992 - 24000947
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  24000992 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 24000947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 39582879 - 39582944
Alignment:
Q  370 catgtccaacaccggcacatgtgattaaattcaatcatgtcattttctcaaattactaccaatgtc 435  Q
    |||||||||||||| ||||  ||| || ||||||| |||||||||||| |||| ||||||| ||||    
T  39582879 catgtccaacaccgacacacatgactatattcaataatgtcattttcttaaatcactaccagtgtc 39582944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 41861796 - 41861841
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  41861796 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 41861841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 42538411 - 42538366
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||| |||||||||  ||||||||||||    
T  42538411 ttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgcca 42538366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 43343604 - 43343559
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||| ||||||||| ||||| |||||||||||||    
T  43343604 ttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgcca 43343559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 44326298 - 44326343
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||    
T  44326298 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgcca 44326343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 44416914 - 44416869
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||| ||||||||| ||||| |||||||||||||    
T  44416914 ttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgcca 44416869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 12843047 - 12843087
Alignment:
Q  389 tgtgattaaattcaatcatgtcattttctcaaattactacc 429  Q
    |||||||| ||||||| ||||||||||||||||||| ||||    
T  12843047 tgtgattatattcaattatgtcattttctcaaattaatacc 12843087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 32564455 - 32564499
Alignment:
Q  41 gccacatgtcagaattttgtgtgggtgt-aagaggtgtattgcca 84  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  32564455 gccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 32564499  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 43160539 - 43160491
Alignment:
Q  380 accggcacatgtgattaaattcaatcatgtcattttctcaaattactac 428  Q
    |||| |||||||||||| ||||||| |||| ||||||| ||||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattactac 43160491  T

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Target: scaffold0100 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 35472 - 35391
Alignment:
Q  3 aaccatactttctctttcatctcctctcccttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||    
T  35472 aaccatactttctctttcatctcctctcccttttccttgccgcatgtctggattttgtatgggtgtaagaggtgtattgcca 35391  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 805 - 850
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  805 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgcca 850  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 14169 - 14124
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||    
T  14169 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgcca 14124  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 24497 - 24452
Alignment:
Q  39 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgcca 84  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||    
T  24497 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgcca 24452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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