View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_17 (Length: 448)
Name: NF11894_low_17
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 24864511 - 24864087
Alignment:
| Q |
7 |
gaagcagagatgatttacttctaatggaagaagtaaaattacggtgcatgttgtctcttcttcatcgaggagctgatgtagcaagtgttagcttggaaaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24864511 |
gaagcagagatgatttacttctaatggaagaagtaaaattacggtgcatgttgtctcttcttcatcgaggagctgatgtagcaagtgttagcttggaaaa |
24864412 |
T |
|
| Q |
107 |
atgcagtgaagcagtttgggaattagatgaagaggttcgtgcaagctacgtgacacacattgaactccaacgacatgaactcggtaaaattatgttatta |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24864411 |
atgcagtgaagcagtttgggaattagatgaagaggttcgtgcaagctacgtgacacacattgaactccaacaacatgaactcggtaaaattatgttatta |
24864312 |
T |
|
| Q |
207 |
gatggatgttttctgttagaacttctaatatcaaagggattagattcacaatttcctagccgtttatggccacctggtccggcaactgaagtgctgaaag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24864311 |
gatggatgttttctgttagaacttctaatatcaaagggattagattcacaatttcctagccgtttatggccacctggtccggcaactgaagtgctaaaag |
24864212 |
T |
|
| Q |
307 |
accatgatgttctttctgatctaatgttattggagaaccagatcccaattatggtcctccataagttgtctcaaacactttttccaaatgtgtttgaacc |
406 |
Q |
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| T |
24864211 |
agcatgatgttctgtctgatctaatgttattggagaaccagatcccaattatggtcctccataagttgtctcaaacactttttccaaatgtgtttgaacc |
24864112 |
T |
|
| Q |
407 |
agataggatagagacggaggaggaa |
431 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
24864111 |
agataggatagagacggaggaggaa |
24864087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 96 - 410
Target Start/End: Complemental strand, 24827825 - 24827511
Alignment:
| Q |
96 |
agcttggaaaaatgcagtgaagcagtttgggaattagatgaagaggttcgtgcaagctacgtgacacacattgaactccaacgacatgaactcggtaaaa |
195 |
Q |
| |
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|||||||| |||||||||| || ||||||||||||||| |||||||||||| | ||||| || | || || ||||| ||||||||||||||| ||||| |
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| T |
24827825 |
agcttggagcaatgcagtgatgccgtttgggaattagataaagaggttcgtgaatgctacctgggagaccttaaactcgaacgacatgaactcgctaaaa |
24827726 |
T |
|
| Q |
196 |
ttatgttattagatggatgttttctgttagaacttctaatatcaaagggattagattcacaatttcctagccgtttatggccacctggtccggcaactga |
295 |
Q |
| |
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|||||||| | ||||||||||||||||| || ||||| |||||||||||||| ||||| ||| ||||||||||||||| |||||| |||| ||| |||| |
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| T |
24827725 |
ttatgttagtggatggatgttttctgttggagcttctcatatcaaagggattggattctcaacttcctagccgtttatttccacctagtcccgcagctga |
24827626 |
T |
|
| Q |
296 |
agtgctgaaagaccatgatgttctttctgatctaatgttattggagaaccagatcccaattatggtcctccataagttgtctcaaacactttttccaaat |
395 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||| || |||| || ||||||||||| ||||||||||||||| || |
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| T |
24827625 |
agtgctgaaagacgatgatgttctgtctgatctaatgttgttggagaatcagatcccctttttggttcttcataagttgtcccaaacactttttccatat |
24827526 |
T |
|
| Q |
396 |
gtgtttgaaccagat |
410 |
Q |
| |
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||||||||||||||| |
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| T |
24827525 |
gtgtttgaaccagat |
24827511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 33 - 398
Target Start/End: Complemental strand, 24835639 - 24835259
Alignment:
| Q |
33 |
gaagaagtaaaattacggtgcatgttgtctcttcttcatcgaggagctgatgtagcaagtgttagcttggaaaaatgcagtgaagcagtttgggaattag |
132 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||| ||||||| | || |||| ||| |||||| | |||||||||||||||||||||||||||| |
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| T |
24835639 |
gaagaagtcaaattacgctgcatgttgtctcttattcatagaggagcaggtgcagcacgtgaaagcttgaagaaatgcagtgaagcagtttgggaattag |
24835540 |
T |
|
| Q |
133 |
atgaagaggttcgtgcaagctacgtgacacacattgaactccaacgacatgaactcggtaaaattatgttattagatggatgttttctgttagaacttct |
232 |
Q |
| |
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||||| ||||||||||||| || ||||| | || | ||| ||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
24835539 |
atgaaaaggttcgtgcaagttatgtgacctcgctaaaatttgaacaacaggaactcgctaaaattatgttattggatggatgttttctgttagagcttct |
24835440 |
T |
|
| Q |
233 |
aatatcaaag---------------ggattagattcacaatttcctagccgtttatggccacctggtccggcaactgaagtgctgaaagaccatgatgtt |
317 |
Q |
| |
|
||||||||| |||||| |||| | | || ||||||||| |||| ||||||||||| ||||||| || |||||| |||||||| |
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| T |
24835439 |
catatcaaagtcagagggatcaaagggattaaattctcgacttaaaagccgtttaaagccatctggtccggcagctgaagtcctaaaagacgatgatgtt |
24835340 |
T |
|
| Q |
318 |
ctttctgatctaatgttattggagaaccagatcccaattatggtcctccataagttgtctcaaacactttttccaaatgtg |
398 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||| |||| || ||| |||||| |||||||||||||||||||||| |
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| T |
24835339 |
ttgtctgatctaatgttgttggagaaccagatcccaattctggttcttcatgagttgtttcaaacactttttccaaatgtg |
24835259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 133 - 400
Target Start/End: Complemental strand, 24727941 - 24727674
Alignment:
| Q |
133 |
atgaagaggttcgtgcaagctacgtgacacacattgaactccaacgacatgaactcggtaaaattatgttattagatggatgttttctgttagaacttct |
232 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||| || | |||||| | || ||||||| || | |||| ||||||||||||||| ||||| |
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| T |
24727941 |
atgaagaggttcgtgcaagctacctggcaaacattgaacttgaaacatgtgaactagctacaattatgctagtggatgcatgttttctgttagagcttct |
24727842 |
T |
|
| Q |
233 |
aatatcaaagggattagattcacaatttcctagccgtttatggccacctggtccggcaactgaagtgctgaaagaccatgatgttcttt----ctgatct |
328 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||| ||||| |||||||||| |||| |||||||||| |||||||| |||||| || ||||||| |
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| T |
24727841 |
catatcaaagagattagattctcaacttcctagcagtttacatccacctggtctggcatctgaagtgctcaaagaccaggatgtttgttttgtctgatct |
24727742 |
T |
|
| Q |
329 |
aatgttattggagaaccagatcccaattatggtcctccataagttgtctcaaacactttttccaaatgtgtt |
400 |
Q |
| |
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|||||||||||||||||| ||| || |||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
24727741 |
aatgttattggagaaccaaatc----ttcaggtcctccataagttggctgaaacactttttccaaatgtgtt |
24727674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 24897418 - 24897346
Alignment:
| Q |
179 |
acatgaactcggtaaaattatgttattagatggatgttttctgttagaacttctaatatcaaagggattagat |
251 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||| || |||||| |
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|
| T |
24897418 |
acatgaactcgcaaaaattatgttagtagatggttgttttctgttagagcttctaatatcaaaagggttagat |
24897346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 24898989 - 24899046
Alignment:
| Q |
7 |
gaagcagagatgatttacttctaatggaagaagtaaaattacggtgcatgttgtctct |
64 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| || | |||||||||||| |
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|
| T |
24898989 |
gaagcagagaagatttacttctaatggaagaagtcaaattgcgctccatgttgtctct |
24899046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 24856126 - 24856068
Alignment:
| Q |
192 |
aaaattatgttattagatggatgttttctgttagaacttctaatatcaaagggattaga |
250 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| || |||||||||||||| || ||||| |
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|
| T |
24856126 |
aaaattatgttagtagatggttgttttctgttggagcttctaatatcaaaagggttaga |
24856068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 403
Target Start/End: Original strand, 24899271 - 24899391
Alignment:
| Q |
283 |
gtccggcaactgaagtgctgaaagaccatgatgttctttctgatctaatgttattggagaaccagatcccaattatggtcctccataagttgtctcaaac |
382 |
Q |
| |
|
|||| ||| ||||||| || |||||| | |||||| | |||||||||||||| ||||| || || || |||||| | || || || ||||||||||||| |
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|
| T |
24899271 |
gtcctgcacctgaagtactaaaagacgaagatgttttgtctgatctaatgttgttggaaaatcaaataccaattttagtacttcacaagttgtctcaaat |
24899370 |
T |
|
| Q |
383 |
actttttccaaatgtgtttga |
403 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
24899371 |
tcttttcccaaatgtttttga |
24899391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 24841889 - 24841946
Alignment:
| Q |
7 |
gaagcagagatgatttacttctaatggaagaagtaaaattacggtgcatgttgtctct |
64 |
Q |
| |
|
||||||| || ||||||||||| |||||| |||| |||||||| | |||||||||||| |
|
|
| T |
24841889 |
gaagcagggaagatttacttcttatggaaaaagtcaaattacgttccatgttgtctct |
24841946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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