View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_18 (Length: 447)
Name: NF11894_low_18
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 2252402 - 2252821
Alignment:
| Q |
1 |
acagaatttagtgcaatcagctttataaattagacgaatattgcaagtacggtatttctataaatgaacaacataaataacaaagataaggactgatttt |
100 |
Q |
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| T |
2252402 |
acagaatttggtgcaatcagctttataaattagacgaatattgcaagtacggtatttctataaatgaacaacataaataacaaagataaggactgatttc |
2252501 |
T |
|
| Q |
101 |
ctatcaactatcttctggagataatgatataaccagaaatttgtactcctagttacaaaaaacatctcatcattttatctaaattccatgtaacttgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2252502 |
ctatcaactatcttctggagataatgatataaccagaaatttgtactcctagttacaaaaaacatctcatcattttatctaaattccatgtaacttgcat |
2252601 |
T |
|
| Q |
201 |
caaacatagaggtgttgaaattatgtgtgcacttagctagttgttgtagtctcatagacagtgatcggcgattgccctgcagacgcattggtatttggta |
300 |
Q |
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| T |
2252602 |
caaacatagaggtgttgaaattatgtgtgcacttagctagttgttgtagtctcatagacagtgatcggcgatcgccctgcagacgcattggtatttggta |
2252701 |
T |
|
| Q |
301 |
agacaataagatatgcatttcttgaattggaaatggcataagatggcatttacaaataaaatcacaaggaaatgcaattcgaagttatacacgtacaact |
400 |
Q |
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| T |
2252702 |
agacaataagatatgcatttcttgaattggaaatggcataagatggcatttacaaataaaatcacaaggaactgcaattcgaagttatacacgtacaact |
2252801 |
T |
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| Q |
401 |
aacttgatcactggaccctc |
420 |
Q |
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|||||||||||||||||||| |
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| T |
2252802 |
aacttgatcactggaccctc |
2252821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 18948467 - 18948315
Alignment:
| Q |
52 |
gtatttctataaatgaacaacataaataac-aaagataaggactgattttctatcaactatcttct-ggagataatgatataaccagaaatttgtactcc |
149 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||| |||||| | |||| ||||||||||| ||| || ||||| |
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| T |
18948467 |
gtatttctataaatgaacaatataaataacaaaagataaggattgattttttatcaaatatcttgtgggaggcaatgatataacagaaaaactgaactcc |
18948368 |
T |
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| Q |
150 |
tagttacaaaaaacatctc--atcattttatctaaattccatgtaacttgcat |
200 |
Q |
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|||| ||||| |||||||| || ||||||||||||| ||||| ||||||||| |
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| T |
18948367 |
tagtaacaaagaacatctcatataattttatctaaatgccatggaacttgcat |
18948315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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