View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_19 (Length: 429)
Name: NF11894_low_19
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 489501 - 489902
Alignment:
| Q |
16 |
agagatgttcaaagtcggtagaatagttgctacgacacataatttgatcaaatcattattgttccgcaatatacttgttagtataaagtgttgtcaaata |
115 |
Q |
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| T |
489501 |
agagatgttcaaagtcggtagaatagttgctacgacacataatttgatcaaatcattattgttccgcaatatacttgttagtataaagtgttgtcaaata |
489600 |
T |
|
| Q |
116 |
tatagcagctatataagcactataacactgtagcataacgaagtttgaataaaccattattttctgcgattcacaattaacacnnnnnnn-------ata |
208 |
Q |
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| T |
489601 |
tatagcagctatatcagcactataacactatagcataacgaagtttgaataaaccattattttctgcgattcacaattaacacttttttttttttttata |
489700 |
T |
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| Q |
209 |
acagtacaccggagttcttggtgtgtttaactgccaaggaggaggatggtttcgcgagataagatcaaacaaatgtgcttctgagttttcacattcggta |
308 |
Q |
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| T |
489701 |
acagtacactggagttcttggtgtgtttaactgccaaggaggaggatggtttcgcgagataagatcaaacaaatgtgcttctgagttttcacattcggta |
489800 |
T |
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| Q |
309 |
tcaactaagatcaacatcaaagacattgaatggaacagtggaaagaatccaattcccattgaaggagttcaagtttttgctttgtatttcagccaagcca |
408 |
Q |
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| T |
489801 |
tcaactaagatcaacatcaaagacattgaatggaacagtggaaagaatccaattcccattgaaggagttcaagtttttgctttgtatttcagccaagcca |
489900 |
T |
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| Q |
409 |
ag |
410 |
Q |
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|| |
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| T |
489901 |
ag |
489902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 24769309 - 24769368
Alignment:
| Q |
56 |
aatttgatcaaatcattattgttccgcaatatacttgttagtataaagtgttgtcaaata |
115 |
Q |
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| T |
24769309 |
aatttgaacaaatcattattgttctgcaatacactatttagtacaaagtattgtcaaata |
24769368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 50402706 - 50402655
Alignment:
| Q |
64 |
caaatcattattgttccgcaatatacttgttagtataaagtgttgtcaaata |
115 |
Q |
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||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
50402706 |
caaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaata |
50402655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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