View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_20 (Length: 415)
Name: NF11894_low_20
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 399
Target Start/End: Complemental strand, 49685001 - 49684604
Alignment:
| Q |
5 |
gatcactaagctgactgaacaatatatttaaccgaaaatgaaccgccaaataaccaacaagtactagcaattcaacagcttgaacttgttcagtaatgcg |
104 |
Q |
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| T |
49685001 |
gatcactaagctgactgaacaatatatttaaccgaaaaagaaccgccaaataatcaacaagtactagcaattcaacggcttgaacttgttcagtaatgca |
49684902 |
T |
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| Q |
105 |
ttgtttttcttttcttattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagtt |
204 |
Q |
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| T |
49684901 |
ttgtttttcttttcttattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagtt |
49684802 |
T |
|
| Q |
205 |
aaagccaaaaccctaaagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctc---ttctcctctagggacgactttccttt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49684801 |
aaagccaaaaccctaaagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctcttcttctcctctagggacgactttccttt |
49684702 |
T |
|
| Q |
302 |
gctattacgaacaagcagaatgggtgcattcttcgcaagtcacaaatgttgaactatgctcaggtaattctaattccttgtaactcaattactactag |
399 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49684701 |
gctattacgaacaggcagaatggatgcattcttcgcaagtcacaaatgttgaactatgctcaggtaattctaattccttgtaactaaattactactag |
49684604 |
T |
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