View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11894_low_23 (Length: 377)
Name: NF11894_low_23
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_23 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 47804884 - 47804519
Alignment:
| Q |
12 |
gagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47804884 |
gagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaacaagagaaatgatca |
47804785 |
T |
|
| Q |
112 |
atcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804784 |
atcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctc |
47804685 |
T |
|
| Q |
212 |
acaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804684 |
acaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcg |
47804585 |
T |
|
| Q |
312 |
ataactcgttcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaa |
377 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804584 |
ataactcgatcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaa |
47804519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 47807443 - 47807081
Alignment:
| Q |
15 |
atggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47807443 |
atggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgatcaatc |
47807344 |
T |
|
| Q |
115 |
atttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47807343 |
atttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcaca |
47807244 |
T |
|
| Q |
215 |
agatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
47807243 |
agatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaatcaccctactcgcaaagctttcaggctgtttcgata |
47807144 |
T |
|
| Q |
315 |
actcgttcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaa |
377 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
47807143 |
actcgaataccaagcttcgctttaggtagataagcttgatatttttggcattaatcgatgcaa |
47807081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University