View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_low_24 (Length: 373)

Name: NF11894_low_24
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_low_24
NF11894_low_24
[»] chr2 (4 HSPs)
chr2 (1-195)||(24454616-24454813)
chr2 (16-102)||(1615831-1615919)
chr2 (16-75)||(12741805-12741866)
chr2 (16-75)||(23348923-23348984)
[»] chr8 (5 HSPs)
chr8 (16-223)||(27541354-27541563)
chr8 (299-351)||(27541222-27541275)
chr8 (16-75)||(5657888-5657949)
chr8 (17-75)||(31100815-31100875)
chr8 (16-75)||(14677964-14678025)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-75)||(35180-35241)
[»] chr7 (4 HSPs)
chr7 (16-75)||(1262205-1262266)
chr7 (16-75)||(26909924-26909985)
chr7 (16-75)||(48849750-48849811)
chr7 (16-75)||(43071325-43071386)
[»] chr6 (2 HSPs)
chr6 (16-75)||(33045374-33045435)
chr6 (36-76)||(10092637-10092677)
[»] chr3 (3 HSPs)
chr3 (16-75)||(31685194-31685255)
chr3 (16-75)||(19882054-19882115)
chr3 (16-75)||(53973229-53973290)
[»] chr5 (3 HSPs)
chr5 (16-73)||(22009473-22009532)
chr5 (16-75)||(7473432-7473493)
chr5 (16-75)||(30442490-30442551)
[»] scaffold0596 (1 HSPs)
scaffold0596 (16-75)||(771-832)
[»] scaffold0045 (1 HSPs)
scaffold0045 (16-75)||(11577-11638)
[»] chr4 (1 HSPs)
chr4 (16-75)||(29863304-29863365)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 24454616 - 24454813
Alignment:
Q  1 atttagcttgacattcatctcattctttgatctaatct---ttcaaactttcaaatttgatgtctttttcctatgcaccgaatttccatataacttatag 97  Q
    |||| |||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24454616 atttggcttgacattcatctcatcctttgatctaatctgacttcaaactttcaaatttgatgtctttttcctatgcaccgaattcccatatagcttatag 24454715  T
Q  98 tgtaatgtgatgatgggaggctctataaaaatgagcatttattgattgatactttcaaaacaactaattcatttgtattggaacacacacggttccaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24454716 tgtaatgtgatgatgggaggctctataaaaatgagcatttattgattgatactttcaaaacaactaattcatttgtattggaacacacacggttccaa 24454813  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 1615919 - 1615831
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcaccgaatttccatataacttatagtgtaa 102  Q
    |||||||| |||||||||||| |   ||||||||||||||||||||| | |||||||| |||| |||| | ||||| ||||||||||||    
T  1615919 catctcatcctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaa 1615831  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12741805 - 12741866
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  12741805 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 12741866  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 23348984 - 23348923
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  23348984 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 23348923  T

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Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 27541563 - 27541354
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcaccgaatttccatataacttatagtgtaatgtgatgatgg 113  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||| |||| ||||||| |||||||||||||||| | ||||    
T  27541563 catctcatcctttgatctaatctgaatcaaactttcaaatttgatgtatatttcctatgcaccaaattcccatatagcttatagtgtaatgtgcttatgg 27541464  T
Q  114 gaggctctataaaaatgagcatttattgattgatactttcaaaacaactaattcatttgtattggaacacacacggttccaannnnnnnnagtgaaatca 213  Q
    ||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||        ||||||||||    
T  27541463 gagactcttgaaaaatgagcatttattgattgatactttcaacacaactaattcatttgtattggaacatacaccgtttcaattttttttagtgaaatca 27541364  T
Q  214 gaatcactac 223  Q
    ||||||||||    
T  27541363 gaatcactac 27541354  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 27541275 - 27541222
Alignment:
Q  299 gtcgctgttcatcaacaaaaaa-ctcacccgtccagatctccacttccggccac 351  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  27541275 gtcgctgttcatcaacaaaaaaactcacccgtccagatttccacttccggccac 27541222  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 5657888 - 5657949
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  5657888 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 5657949  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 31100875 - 31100815
Alignment:
Q  17 atctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    ||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  31100875 atctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 31100815  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 14678025 - 14677964
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   |||||||||||||||| |||| | ||||||||||||    
T  14678025 catctcatcctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctatgcac 14677964  T

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Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 35180 - 35241
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  35180 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 35241  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 1262205 - 1262266
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  1262205 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 1262266  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 26909985 - 26909924
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  26909985 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 26909924  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 48849811 - 48849750
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  48849811 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 48849750  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 43071386 - 43071325
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  43071386 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 43071325  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 33045435 - 33045374
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  33045435 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 33045374  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 10092637 - 10092677
Alignment:
Q  36 tctttcaaactttcaaatttgatgtctttttcctatgcacc 76  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  10092637 tctttcaaactttcaaatttgatgtatatttcctatgcacc 10092677  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 31685194 - 31685255
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  31685194 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 31685255  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 19882115 - 19882054
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  19882115 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 19882054  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 53973290 - 53973229
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  53973290 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 53973229  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 22009532 - 22009473
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgc 73  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||    
T  22009532 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgc 22009473  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 7473493 - 7473432
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  7473493 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 7473432  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 30442551 - 30442490
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  30442551 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 30442490  T

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Target: scaffold0596 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 771 - 832
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  771 catctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 832  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 11638 - 11577
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||| ||||||   ||||||||||||||||||||| | ||||||||||||    
T  11638 catctcatcctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 11577  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 29863365 - 29863304
Alignment:
Q  16 catctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 75  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||| | |||| |||||||    
T  29863365 catctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcttatgcac 29863304  T

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