View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_low_29 (Length: 315)

Name: NF11894_low_29
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_low_29
NF11894_low_29
[»] chr5 (4 HSPs)
chr5 (80-298)||(7497998-7498212)
chr5 (48-116)||(28056382-28056450)
chr5 (68-116)||(4800521-4800570)
chr5 (68-116)||(32379949-32379997)
[»] chr2 (1 HSPs)
chr2 (68-115)||(43621968-43622015)
[»] scaffold0252 (1 HSPs)
scaffold0252 (74-116)||(8001-8043)
[»] chr4 (2 HSPs)
chr4 (33-71)||(24088521-24088559)
chr4 (68-116)||(24088584-24088632)
[»] chr8 (3 HSPs)
chr8 (75-116)||(40614217-40614258)
chr8 (68-116)||(12697733-12697781)
chr8 (68-116)||(42012610-42012658)
[»] chr7 (2 HSPs)
chr7 (75-116)||(47530318-47530359)
chr7 (68-128)||(37385253-37385313)
[»] chr3 (3 HSPs)
chr3 (81-133)||(12094422-12094475)
chr3 (68-116)||(28300668-28300716)
chr3 (68-116)||(50280107-50280155)
[»] chr1 (2 HSPs)
chr1 (68-129)||(34395939-34396000)
chr1 (68-116)||(39380839-39380887)
[»] scaffold0002 (1 HSPs)
scaffold0002 (68-116)||(440721-440769)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 80 - 298
Target Start/End: Original strand, 7497998 - 7498212
Alignment:
Q  80 caaaagttgtcatagagtagttgtataaatatcatttgtattttataaataaaatttatgctgccatttattattgaaatcctttttgcactttatctca 179  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7497998 caaaagttgtcatagagtagttgtataaatataatttctattttataa----aatttatgcggccatttattattgaaatcctttttgcactttatctca 7498093  T
Q  180 aaagcaaattaatttttatactcatacaacttagcggggtttcaggcagtggaaaattgagttgggcaaatgaagacggtactagcacaatcgatatacg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7498094 aaagcaaattaatttttatactcatacaacttagcggggtttcaggcagtggaaaattgagttgggcaaatgaagacggtactagcacaatcgatatacg 7498193  T
Q  280 tgaaggagatgtaggaagt 298  Q
    |||||||||||||||||||    
T  7498194 tgaaggagatgtaggaagt 7498212  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 28056382 - 28056450
Alignment:
Q  48 taaacacatgatgtgagtacgagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||| | ||||| ||  ||||||||||    
T  28056382 taaaaacatgatgtgagtacgagagagatgttcaaaagttatcataaaatagttttacgaatatcattt 28056450  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 4800521 - 4800570
Alignment:
Q  68 gagatagttgttc-aaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| |||||||| ||||||||||| | ||||||||||||||||||||||    
T  4800521 gagagagttgttccaaaagttgtcaaaaagtagttgtataaatatcattt 4800570  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 32379949 - 32379997
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| ||||||||||||||||||||| | |||||||| ||||| |||||    
T  32379949 gagaaagttgttcaaaagttgtcataaactagttgtacaaataccattt 32379997  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 43621968 - 43622015
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcatt 115  Q
    |||| ||||||||||||||||||||| | |||||||| ||||||||||    
T  43621968 gagaaagttgttcaaaagttgtcataaaatagttgtacaaatatcatt 43622015  T

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Target: scaffold0252 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 8001 - 8043
Alignment:
Q  74 gttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||||||||||||||||||| | | ||||||||||||||||||    
T  8001 gttgttcaaaagttgtcataaaatggttgtataaatatcattt 8043  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 24088521 - 24088559
Alignment:
Q  33 aaggaaggaagagagtaaacacatgatgtgagtacgaga 71  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  24088521 aaggaagaaagagagtaaacacatgatgtgagtatgaga 24088559  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 24088584 - 24088632
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| ||||||||||||||||||||| | | |||||| |||||||||||    
T  24088584 gagagagttgttcaaaagttgtcataaaatggttgtacaaatatcattt 24088632  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 40614217 - 40614258
Alignment:
Q  75 ttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||||||||| || ||||| ||||||||||||||||||||||    
T  40614217 ttgttcaaaaattatcataaagtagttgtataaatatcattt 40614258  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 12697733 - 12697781
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| |||||||||||| || ||||| | ||||||||||||||||||||    
T  12697733 gagaaagttgttcaaaaattatcataaaatagttgtataaatatcattt 12697781  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 42012610 - 42012658
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| ||||||  ||||||| ||||| ||||||||||||||||||||||    
T  42012610 gagaaagttgtcaaaaagttatcataaagtagttgtataaatatcattt 42012658  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 47530318 - 47530359
Alignment:
Q  75 ttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    ||||||||||||||||||| | | ||||||||||||||||||    
T  47530318 ttgttcaaaagttgtcataaaatggttgtataaatatcattt 47530359  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 37385253 - 37385313
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcatttgtattttataaa 128  Q
    |||| |||||| |||||||||||| | | |||||||| ||||||||||| | |||||||||    
T  37385253 gagaaagttgtacaaaagttgtcaaaaaatagttgtacaaatatcatttatcttttataaa 37385313  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 12094422 - 12094475
Alignment:
Q  81 aaaagttgtcatagagtagttgtataaatatcatttgt-attttataaataaaa 133  Q
    |||| |||||||| | |||||||||||||||||||| | |||||||||||||||    
T  12094422 aaaaattgtcataaaatagttgtataaatatcatttctcattttataaataaaa 12094475  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 28300668 - 28300716
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| ||||||| ||||||||||||| ||| |||||| |||||||||||    
T  28300668 gagaaagttgttaaaaagttgtcataaagtggttgtacaaatatcattt 28300716  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 50280107 - 50280155
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| |||||| |||||||||||||||| | |||||| |||||||||||    
T  50280107 gagaaagttgtacaaaagttgtcatagaatggttgtacaaatatcattt 50280155  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 34395939 - 34396000
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcatttgtattttataaat 129  Q
    |||| ||||||||||||||||||||| | ||| |||| ||||||||||| |  |||||||||    
T  34395939 gagaaagttgttcaaaagttgtcataaaatagatgtacaaatatcatttatcctttataaat 34396000  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 39380839 - 39380887
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||||||||||  ||||||||||||| | | ||||||||||||||||||    
T  39380839 gagatagttgtaaaaaagttgtcataaaatggttgtataaatatcattt 39380887  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 440769 - 440721
Alignment:
Q  68 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 116  Q
    |||| ||||||  ||||||||||||| |||||||||| |||||||||||    
T  440769 gagaaagttgtctaaaagttgtcataaagtagttgtacaaatatcattt 440721  T

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