View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11894_low_3 (Length: 913)
Name: NF11894_low_3
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 548; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 303 - 895
Target Start/End: Complemental strand, 37161173 - 37160581
Alignment:
| Q |
303 |
tgtaggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgc |
402 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37161173 |
tgtaggtcattacagtatttgcagttgtaagagtgattagatccaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgc |
37161074 |
T |
|
| Q |
403 |
tgaatatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggtcagtttttt |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37161073 |
tgaatatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggtcagtttttt |
37160974 |
T |
|
| Q |
503 |
ctatacatgtctacttttcattccttaggtaattgtgatttttccaaattcattgtaaatctaagtatacacttaattaattgcaggagtaccggggttt |
602 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37160973 |
ctatacatgtctacttttcattccttaggtaattgtgatttttccaaattcattgtaaatctaagtatacacttaattaattgcaggagtaccggggttt |
37160874 |
T |
|
| Q |
603 |
gcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgctgtcggtataaatgctggccagc |
702 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37160873 |
gcagcatgggtgggaatagaggtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgctgtcggtataaatgctggccagc |
37160774 |
T |
|
| Q |
703 |
tggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaacctatcatttcttttcnnnnnnnctctatttgaaatcactaga |
802 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37160773 |
tggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaacctatcatttcttttctttttttctctatttgaaatcactaga |
37160674 |
T |
|
| Q |
803 |
tcatggacccgtgcgatgcatgttgggcacaattgtttgaaattgtatatatctaacaaacttcaagcacatccatagtttgacagaggagaa |
895 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
37160673 |
tcatggacccgtgcgatgcatgttgggcataattgtttgaaattgtatatatctaacagacttcaagcacatccatagtgtgacagaggagaa |
37160581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 37161451 - 37161231
Alignment:
| Q |
11 |
aagcagagaatggtacttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37161451 |
aagcagagaatggtacttagctggatattccactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattca |
37161352 |
T |
|
| Q |
111 |
atccctgataatcatctagccgttgaaactctccttctctccgttgatccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcac |
210 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37161351 |
atccctgataatcatctagcagttgaaactctccttctttccgttgacccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcac |
37161252 |
T |
|
| Q |
211 |
aatatcaacttaatcaggtac |
231 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
37161251 |
aatatcaacttaatcaggtac |
37161231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 37155850 - 37155692
Alignment:
| Q |
11 |
aagcagagaatggtacttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattca |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| |
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| T |
37155850 |
aagcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattca |
37155751 |
T |
|
| Q |
111 |
atccctgataatcatctagccgttgaaactctccttctctccgttgatccttatcttcg |
169 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
37155750 |
atccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcg |
37155692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 580 - 763
Target Start/End: Complemental strand, 37149762 - 37149579
Alignment:
| Q |
580 |
taattgcaggagtaccggggtttgcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgc |
679 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||| ||||||| | | |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37149762 |
taattgcaggagtacctgggtttgcagcatggttgggaatagaggtactaggaaacccaaagccagcatcaaatgtgttcatatctgctgcatctggtgc |
37149663 |
T |
|
| Q |
680 |
tgtcggtataaatgctggccagctggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaaccta |
763 |
Q |
| |
|
||| ||||| | |||||| || || |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
37149662 |
tgttggtatgattgctggtcaacttgctaagatacgaggatgtcgggtcattggcagcactggctctgatgataaggtaaccta |
37149579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 581 - 773
Target Start/End: Complemental strand, 37153722 - 37153530
Alignment:
| Q |
581 |
aattgcaggagtaccggggtttgcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgct |
680 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||| ||| ||| ||||||||| ||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
37153722 |
aattgcaggagtagcggggtttgcagcatggttgggaatagaggtaataggagatccaaaaccaggatcacatgtattcatatctgctgcatctggtgct |
37153623 |
T |
|
| Q |
681 |
gtcggtataaatgctggccagctggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaacctatcatttcttt |
773 |
Q |
| |
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|| ||||| | |||||||||||| |||||||||||||||||| |||||||||| ||||| ||||| ||||||||||| || |||| ||||||| |
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| T |
37153622 |
gtaggtatgagtgctggccagcttgctaagatccgaggatgtcgggtcatcggaagcacgggctccgatgataaggtgacttatcttttcttt |
37153530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 37150718 - 37150504
Alignment:
| Q |
17 |
agaatggtacttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccct |
116 |
Q |
| |
|
|||||||||| |||||| ||| | | |||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||| |
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| T |
37150718 |
agaatggtacgtagctgcatactctcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgcccatgaatcaatccct |
37150619 |
T |
|
| Q |
117 |
gataatcatctagccgttgaaactctccttctctccgttgatccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcacaatatc |
216 |
Q |
| |
|
||| | |||||| ||| ||||||||||||||||| |||||||| |||||||| |||| |||||| || ||| ||||||||||||||| ||||||||| |
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|
| T |
37150618 |
gatgaccatctaatcgtcgaaactctccttctctctgttgatccatatcttcgcggaacaatcaccggcacccttgaaggccttttcattccacaatatc |
37150519 |
T |
|
| Q |
217 |
aacttaatcaggtac |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37150518 |
aacttaatcaggtac |
37150504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 306 - 493
Target Start/End: Complemental strand, 37150290 - 37150103
Alignment:
| Q |
306 |
aggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgctga |
405 |
Q |
| |
|
||||| ||||| |||||| |||||||| || ||| |||| ||||||||||||||||||||||||||||| ||||||||| | ||| || |||||||| |
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|
| T |
37150290 |
aggtgcttacaacatttgcggttgtaagggtaattcgatcgaaggatagtaaatacagtgagggggatatccttttgaatggatatggtctcgttgctga |
37150191 |
T |
|
| Q |
406 |
atatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggt |
493 |
Q |
| |
|
||||| |||||||| |||||||| |||| ||||||||||||| || | ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37150190 |
gtatagcattgtaccctcttctcatataattagaaaaattgatcctgctaatgggatttcactgtctgattatcttggttctttaggt |
37150103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 316 - 493
Target Start/End: Complemental strand, 37155426 - 37155249
Alignment:
| Q |
316 |
agtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgctgaatatagtatt |
415 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||||||||||||||||| ||| || ||||| ||||||||| |||| | |||||||| ||||||||| |
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| T |
37155426 |
agtatttgcaattgtaagagtaattcgatcaaaggatagtaaatacactgaaggagatatccttttgaatgggaatggttacgttgctgagtatagtatt |
37155327 |
T |
|
| Q |
416 |
gtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggt |
493 |
Q |
| |
|
||||| |||||| | |||| || ||||||||| || | ||||||||||| |||| |||||||||||| |||||||| |
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| T |
37155326 |
gtaccctcttctgacataatgaggaaaattgatcctgctaatgggatttcactgtcagattatcttggtactttaggt |
37155249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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