View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_34 (Length: 284)
Name: NF11894_low_34
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 1876312 - 1876552
Alignment:
| Q |
18 |
ataaaagtacctagcaaatgt-gctctgaaaagtcttcaataaaatgtttgttgttattagttatctattttagtattgtaaaagtggctgcaacaataa |
116 |
Q |
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| T |
1876312 |
ataaaagtacctagcaaatgtagctctgaaaagtcttcaataaaatgtttgttgttattagttatctattttagtattgtaaaagtggctgcaacaataa |
1876411 |
T |
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| Q |
117 |
cataatagttcttgaggtctttgcaattgcaatgcaattaaaattggagtgcagtttgttgtcgacttatctttcattttggtctacttttttatgtgta |
216 |
Q |
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| T |
1876412 |
cataatagttcttgaggtctt-----------tgcaattaaaattggagcgcagtttgttgtcgacttatctttcattttggtctacttttttatgtgta |
1876500 |
T |
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| Q |
217 |
ttattttaaagattgatttgtattgaaattgcgaactacattagtttgtaat |
268 |
Q |
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| T |
1876501 |
ttattttaaagattgatttgtattgaaattgcgaactacattagtttgtaat |
1876552 |
T |
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