View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11894_low_35 (Length: 274)
Name: NF11894_low_35
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_35 |
 | |
|
| [»] scaffold0284 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13491788 - 13492045
Alignment:
| Q |
1 |
gatttgctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13491788 |
gatttgctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttgaatttgtgacaccgacttcattttattc |
13491887 |
T |
|
| Q |
101 |
caaagcattgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13491888 |
caaagcattgaaatcaggtgatcttttcgttattccacaagggatgttgcattttgtagttaactccggcaagggaacagctgctggttttgctgcttat |
13491987 |
T |
|
| Q |
201 |
agtaatgaaaatcctactgttcaacaacttgatcttcttttgtttgccaataagttac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13491988 |
agtaatgaaaatcctactgttcaacaacttgatcttcttttgtttgccaataagttac |
13492045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 15337562 - 15337312
Alignment:
| Q |
6 |
gctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaag |
105 |
Q |
| |
|
|||||||||||||||||||| | | | || |||||| | ||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
15337562 |
gctccaatgcatactcatcctgatgcaactgaattattgtcagtagttaaaggtgaaattactgctggatttttgacacctacttcattttattccaaag |
15337463 |
T |
|
| Q |
106 |
cattgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaa |
205 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||| ||||| ||||||| ||||| || || ||||||| |||| ||| ||||| ||||| ||||| |
|
|
| T |
15337462 |
ttttgaaatcgggtgatgtttttgtttttccacaaggaatgttgcattttgcggttaattcaggtaagggaaaagctactgcttttggtgcttttagtag |
15337363 |
T |
|
| Q |
206 |
tgaaaatcctactgttcaacaacttgatcttcttttgtttgccaataagtt |
256 |
Q |
| |
|
||||||||| ||| ||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
15337362 |
tgaaaatcccactactcatatacttgatgttcttttgtttggcaataagtt |
15337312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 19144183 - 19143933
Alignment:
| Q |
8 |
tccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagca |
107 |
Q |
| |
|
|||||||||||||||||| | | | ||||||||| | ||||||||||||||||||||||||| ||||||| |||| || ||| |||||||||| || | |
|
|
| T |
19144183 |
tccaatgcatactcatcccgatgcaaccgaattattgatagtagttcaaggtgaaattactgctggatttttgacgcctactacattttattctaagacg |
19144084 |
T |
|
| Q |
108 |
ttgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaatg |
207 |
Q |
| |
|
|||||| |||||||| |||| ||| ||||| |||||||||| ||||||| |||||| || || ||||||| |||| ||| ||||| |||| |||||||| |
|
|
| T |
19144083 |
ttgaaaccgggtgatatttttgtttttccaaaagggatgttgcattttgcagttaattctggtaagggaaaagctactgcttttggtgctcttagtaatg |
19143984 |
T |
|
| Q |
208 |
aaaatcctactgttcaacaacttgatcttcttttgtttgccaataagttac |
258 |
Q |
| |
|
|||||||| | | || ||||||||||||||||||||| |||||||||| |
|
|
| T |
19143983 |
aaaatcctcgtactaaaatacttgatcttcttttgtttgcgaataagttac |
19143933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 19623739 - 19623484
Alignment:
| Q |
1 |
gatttgctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||| | | | || |||||| | |||||| ||||||||||||||| ||||||| ||||||| ||||| |||||||| |
|
|
| T |
19623739 |
gattagctccaatgcatactcatcctgatgcaactgaattattgtcggtagttgaaggtgaaattactgctggatttttgacaccaacttctttttattc |
19623640 |
T |
|
| Q |
101 |
caaagcattgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttat |
200 |
Q |
| |
|
||| |||||| | |||||| || | ||| |||||||||| ||||| ||||||| |||||| || || ||||||| |||| ||| ||||| ||||| | |
|
|
| T |
19623639 |
caagttgttgaaaccaggtgatattattgtttttccacaaggaatgttgcattttgcagttaattctggtaagggaaaagctactgcttttggtgctttt |
19623540 |
T |
|
| Q |
201 |
agtaatgaaaatcctactgttcaacaacttgatcttcttttgtttgccaataagtt |
256 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
19623539 |
agtagtgaaaatcctactactcaaatacttgatattcttttgtttggcaataagtt |
19623484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 30568977 - 30568827
Alignment:
| Q |
6 |
gctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaag |
105 |
Q |
| |
|
||||| |||||||||||||| | | | || |||||| | ||||||| ||||||||||||| | ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30568977 |
gctcctatgcatactcatcctgatgcaactgaattattgtcagtagttaaaggtgaaattacagctggatttttgacacctacttcattttattccaaag |
30568878 |
T |
|
| Q |
106 |
cattgaaatcgggtgatcttttcgttattccacaagggatgttacattttg |
156 |
Q |
| |
|
|||||| |||||||| |||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
30568877 |
ttttgaaaccgggtgatgtttttgtttttccacaaggaatgttgcattttg |
30568827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 4505 - 4752
Alignment:
| Q |
6 |
gctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaag |
105 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||| ||| |||||||||||||| |||| ||||||||| | ||||| |||||| | |||||||| | |
|
|
| T |
4505 |
gctccaatgcatactcatcctgatgctaccgaattaattatactagttcaaggtgaatttaccgttggatttataacacctacttcagtgtattccaagg |
4604 |
T |
|
| Q |
106 |
cattgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaa |
205 |
Q |
| |
|
||||||| | ||||||||||| ||| ||||||||||||||||||||||||| |||| |||| |||||| |||| ||| | || | ||| ||||| |
|
|
| T |
4605 |
tattgaaaccaggtgatctttttgttgttccacaagggatgttacattttgtccttaataccggtaagggagtagctactgcctatgtttcttttagtag |
4704 |
T |
|
| Q |
206 |
tgaaaatcctactgttcaacaacttgatcttcttttgtttgccaataa |
253 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||| |||||| |
|
|
| T |
4705 |
tgaaaatcctactgttcacttactagactttcttttgtttggcaataa |
4752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 5559049 - 5559296
Alignment:
| Q |
7 |
ctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagc |
106 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||| || ||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
5559049 |
ctccaatgcatactcatcccgatgctaccgaattagggattgtagttcaaggtgaatttactgctggatttttgacacctacttcattttattccaaggt |
5559148 |
T |
|
| Q |
107 |
attgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaat |
206 |
Q |
| |
|
|||||| |||||||| |||| || ||||| |||||||| ||||||||| | |||| || |||||||||| |||| ||||| || | || ||||| | |
|
|
| T |
5559149 |
gttgaaagcgggtgatgtttttgtcgttccaaaagggatgctacattttgcaattaattctggcaagggaaaagctattggttatgttagttttagtagt |
5559248 |
T |
|
| Q |
207 |
gaaaatcctactgttcaacaacttgatcttcttttgtttgccaataag |
254 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
5559249 |
gaaaatcctacaattcatacacttgattctcttttgtttgccaataag |
5559296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 5550490 - 5550736
Alignment:
| Q |
7 |
ctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagc |
106 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||| || ||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
5550490 |
ctccaatgcatactcatcccgatgctaccgaattagggattgtagttcaaggtgaatttactgctggatttttgacacctacttcattttattccaaggt |
5550589 |
T |
|
| Q |
107 |
attgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaat |
206 |
Q |
| |
|
|||||| |||||||| |||| || ||||| |||||||| ||||||||| | |||| || |||||||||| |||| ||||| || | || ||||| | |
|
|
| T |
5550590 |
gttgaaagcgggtgatgtttttgtcgttccaaaagggatgctacattttgcaattaattctggcaagggaaaagctattggttatgttagttttagtagt |
5550689 |
T |
|
| Q |
207 |
gaaaatcctactgttcaacaacttgatcttcttttgtttgccaataa |
253 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
5550690 |
gaaaatcctacaattcatacacttgattctcttttgtttgccaataa |
5550736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 5568482 - 5568729
Alignment:
| Q |
7 |
ctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagc |
106 |
Q |
| |
|
|||||||||| |||||||| | | ||||||||||| || || |||||||||||| |||||| ||||||| |||| || ||||||||||||||||| | |
|
|
| T |
5568482 |
ctccaatgcacactcatcctgatgctaccgaattagggattgtcgttcaaggtgaatttactgctggatttttgacccctacttcattttattccaaggt |
5568581 |
T |
|
| Q |
107 |
attgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaat |
206 |
Q |
| |
|
|||||| |||||||| |||||||| |||| |||||||||||||||||| |||| || |||||||||| |||| ||||| || || ||||| | |
|
|
| T |
5568582 |
gttgaaagcgggtgatgttttcgttgttcccaaagggatgttacattttgccattaattctggcaagggaaaagctattggttatgtaagttttagtagt |
5568681 |
T |
|
| Q |
207 |
gaaaatcctactgttcaacaacttgatcttcttttgtttgccaataag |
254 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
5568682 |
gaaaatcctacaattcatacacttgattctcttttgtttgccaataag |
5568729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 5635041 - 5635143
Alignment:
| Q |
54 |
caaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagcattgaaatcgggtgatcttttcgttattccacaagggatgttacatt |
153 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| || ||| ||||||| || | || |||| |||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5635041 |
caaggtgaaattactgctggatttttgacacctacatcagtttattctaaggtgttaaaattgggtgatctttttgttattccaaaagggatgttacatt |
5635140 |
T |
|
| Q |
154 |
ttg |
156 |
Q |
| |
|
||| |
|
|
| T |
5635141 |
ttg |
5635143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 9485173 - 9485390
Alignment:
| Q |
6 |
gctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaag |
105 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||| || ||| |||||||||||||| |||| | ||||||| | ||||| |||||| | |||||||| | |
|
|
| T |
9485173 |
gctccaatgcatactcatcctgatgctaccgaatttattatactagttcaaggtgaatttaccgctggatttataacacctacttcagtgtattccaagg |
9485272 |
T |
|
| Q |
106 |
cattgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaa |
205 |
Q |
| |
|
||||||| | ||||||||||| ||| ||||| ||||||||||||||||||| |||| || || |||||| |||| ||| || || | || ||||| |
|
|
| T |
9485273 |
tattgaaaccaggtgatctttttgttgttccataagggatgttacattttgtccttaattctggtaagggagtagctactgcttatgttttttttagtag |
9485372 |
T |
|
| Q |
206 |
tgaaaatcctactgttca |
223 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
9485373 |
tgaaaatcctactattca |
9485390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 3026792 - 3026641
Alignment:
| Q |
6 |
gctccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaag |
105 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||| || ||| |||||||||||||| |||| | ||||||| | ||||| |||||| | |||||||| | |
|
|
| T |
3026792 |
gctccaatgcatactcatcctgatgctaccgaatttattatactagttcaaggtgaatttaccgctggatttataacacctacttcagtgtattccaagg |
3026693 |
T |
|
| Q |
106 |
cattgaaatcgggtgatcttttcgttattccacaagggatgttacattttgt |
157 |
Q |
| |
|
||||||| | ||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
3026692 |
tattgaaaccaggtgatctttttgttgttccagaagggatgttacattttgt |
3026641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 7270916 - 7271063
Alignment:
| Q |
8 |
tccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagca |
107 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| | ||| |||||||||||||||| || | ||||||| ||||||| || || ||||||| || | |
|
|
| T |
7270916 |
tccaatgcatactcatcctggtgctaccgaattattgataatagttcaaggtgaaataaccgctggatttctgacacctaccgcagtttattctaagacg |
7271015 |
T |
|
| Q |
108 |
ttgaaatcgggtgatcttttcgttattccacaagggatgttacatttt |
155 |
Q |
| |
|
|||||| ||||||||||| | ||| |||||||||||||||| |||||| |
|
|
| T |
7271016 |
ttgaaaccgggtgatcttatggtttttccacaagggatgttgcatttt |
7271063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 7282877 - 7283024
Alignment:
| Q |
8 |
tccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagca |
107 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| | ||| |||||||||||||||| || | ||||||| ||||||| || ||| ||||||| || | |
|
|
| T |
7282877 |
tccaatgcatactcatcccggtgctaccgaattattgataatagttcaaggtgaaataaccgctggatttctgacacctacctcagtttattctaagacg |
7282976 |
T |
|
| Q |
108 |
ttgaaatcgggtgatcttttcgttattccacaagggatgttacatttt |
155 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||| |||||||| |||||| |
|
|
| T |
7282977 |
ttgaaaccgggtgatcttatggtttttccacaggggatgttgcatttt |
7283024 |
T |
|
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Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 7287174 - 7287424
Alignment:
| Q |
8 |
tccaatgcatactcatccgggttctaccgaattaataatagtagttcaaggtgaaattactgttggatttgtgacaccgacttcattttattccaaagca |
107 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| | || | ||||| |||||||| |||| ||| ||| | ||| | ||| || ||||||| ||| | |
|
|
| T |
7287174 |
tccaatgcatactcatcctggcgctaccgaattattgattatggttcatggtgaaataactgctgggtttctaacaactactgcagtttattcaaaaacg |
7287273 |
T |
|
| Q |
108 |
ttgaaatcgggtgatcttttcgttattccacaagggatgttacattttgtagttaactccggcaagggaacagctgctggttttgctgcttatagtaatg |
207 |
Q |
| |
|
|||||| ||||||||||| | ||| |||| ||||||||||| |||||| |||||| || || ||||||| |||| ||| |||| | ||| ||||| || |
|
|
| T |
7287274 |
ttgaaaccgggtgatcttatggtttttccccaagggatgttgcattttcaagttaattctggtaagggaaaagctactgcttttcttacttttagtagtg |
7287373 |
T |
|
| Q |
208 |
aaaatcctactgttcaacaacttgatcttcttttgtttgccaataagttac |
258 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
7287374 |
caaatcctggtgctcaattacttgatcttcttttgttttccaataatttac |
7287424 |
T |
|
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