View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_37 (Length: 272)
Name: NF11894_low_37
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33501774 - 33502034
Alignment:
| Q |
1 |
tctaccatcgaattggaaactactggcccggcaaggttcatactcttgaggatagaacttgcactacatggctgtccacaatcaacctttctgaggctat |
100 |
Q |
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| T |
33501774 |
tctaccatcgaattggaaactactggtccggcaaggttcatactcttgaggatagaacttgcactacatggctgtccacaatcaacctttttgaggctat |
33501873 |
T |
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| Q |
101 |
ctggaagctcttcaagcacataatcacccttcggtatttcattatataaggaaaatattaagaactttgttgggacaggaggagatattcttagcatttc |
200 |
Q |
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| T |
33501874 |
ctggaagctcttcaagcacataatcaccctttggtatttcattatataaggaaaatattaagaattttgttgggacaggaggagatatttttagcatttc |
33501973 |
T |
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| Q |
201 |
tcttgctgcatgtagccttatgattcccaacattgtcctagcatgcatctcccatgtctgt |
261 |
Q |
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| T |
33501974 |
tcttgctgcatgtagccttatgattcccaacattgtcctagcatgcatctcccatgtctgt |
33502034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 1217951 - 1218200
Alignment:
| Q |
1 |
tctaccatcgaattggaaactactggcccggcaaggttcatactcttgaggatagaacttgcactacatggctgtccacaatcaacctttctgaggctat |
100 |
Q |
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| T |
1217951 |
tctaccatcgaattggaaactactgggccggcaaggtacatactcttgaggatagaacttg---------gttgtccacaattaacctttgtgaggctat |
1218041 |
T |
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| Q |
101 |
ctggaagctcttcaagcacataatcacccttcggtatttcattatataaggaaaatattaagaactttgttgggacaggaggagatattcttagcatttc |
200 |
Q |
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| T |
1218042 |
ctggaagctcttcaagcacataaccaccctttggtattttattatataaggaaaatattaagaattttgttgggacaggaggtgatattcttagcatttc |
1218141 |
T |
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| Q |
201 |
tcttgctgcatgtagccttatgattcccaacattgtcctagcatgcatctcccatgtct |
259 |
Q |
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| T |
1218142 |
tcttgctgcatgtagccttatggttcccactatggtcccaacatgcatctaccatgtct |
1218200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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