View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11894_low_38 (Length: 262)

Name: NF11894_low_38
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11894_low_38
NF11894_low_38
[»] chr8 (8 HSPs)
chr8 (104-220)||(4173824-4173940)
chr8 (16-110)||(4173991-4174085)
chr8 (16-74)||(16939320-16939378)
chr8 (20-50)||(35555511-35555541)
chr8 (33-70)||(13782179-13782216)
chr8 (33-74)||(34891950-34891991)
chr8 (145-193)||(23431735-23431783)
chr8 (33-81)||(39277553-39277601)
[»] chr1 (9 HSPs)
chr1 (20-79)||(1167496-1167555)
chr1 (22-79)||(20360407-20360464)
chr1 (22-79)||(20550506-20550563)
chr1 (20-51)||(26606761-26606792)
chr1 (22-51)||(46043468-46043497)
chr1 (33-70)||(46909667-46909704)
chr1 (22-51)||(47661549-47661578)
chr1 (33-74)||(50036787-50036828)
chr1 (34-82)||(49502912-49502960)
[»] chr4 (4 HSPs)
chr4 (22-79)||(43210317-43210374)
chr4 (20-51)||(72584-72615)
chr4 (22-51)||(46439643-46439672)
chr4 (20-52)||(19994369-19994401)
[»] chr7 (2 HSPs)
chr7 (20-80)||(47669541-47669601)
chr7 (34-70)||(47521361-47521397)
[»] chr6 (3 HSPs)
chr6 (20-74)||(17596880-17596934)
chr6 (22-51)||(32643448-32643477)
chr6 (34-74)||(456134-456174)
[»] chr3 (1 HSPs)
chr3 (20-51)||(6928806-6928837)
[»] chr2 (4 HSPs)
chr2 (20-74)||(14456441-14456495)
chr2 (33-74)||(14002459-14002500)
chr2 (22-51)||(40539176-40539205)
chr2 (143-183)||(6581275-6581315)
[»] chr5 (3 HSPs)
chr5 (20-74)||(13838503-13838557)
chr5 (33-74)||(30192432-30192473)
chr5 (19-47)||(40622443-40622471)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 4173940 - 4173824
Alignment:
Q  104 tctagaaggcaattttgtaggactatctcttaagaagttatttagttgagaatttttctcttcaacttcaaaaaactcggtttgagacccagaatcaaag 203  Q
    |||| |||||||||||||| |||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  4173940 tctacaaggcaattttgtaagactatctcttaagaagtcatttggttgataatttctctcttcaacttcaaaaaactcggtttgagacccagaattaaag 4173841  T
Q  204 tcaattttgtagggttg 220  Q
    |||||||||||||||||    
T  4173840 tcaattttgtagggttg 4173824  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 4174085 - 4173991
Alignment:
Q  16 gaaaggtattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttccactttgttcctgattttcaccattctagaa 110  Q
    ||||| |||||| ||||||||| ||||||||||||| ||| || ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  4174085 gaaagatattttagtattttacccgtgtttctcagccaaaccacatgtgtcaacaacaacttttcactttgttcctgattttcaccattctagaa 4173991  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 16939378 - 16939320
Alignment:
Q  16 gaaaggtattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaa 74  Q
    ||||||||||| ||||  |||||||||||||||||| ||| || |||||| ||||||||    
T  16939378 gaaaggtatttgggtaaattactcgtgtttctcagcaaaaccaaatgtgtgaacagcaa 16939320  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 35555511 - 35555541
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcag 50  Q
    |||||||||||||||||||||||||||||||    
T  35555511 ggtattttggtattttactcgtgtttctcag 35555541  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 13782216 - 13782179
Alignment:
Q  33 tttactcgtgtttctcagctaaatcatatgtgtcaaca 70  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  13782216 tttactcgtgtttctcagccaaatcaaatgtgtcaaca 13782179  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 34891991 - 34891950
Alignment:
Q  33 tttactcgtgtttctcagctaaatcatatgtgtcaacagcaa 74  Q
    |||| |||||||||||||||||| || |||||||||||||||    
T  34891991 tttattcgtgtttctcagctaaaccaaatgtgtcaacagcaa 34891950  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 23431735 - 23431783
Alignment:
Q  145 ttagttgagaatttttctcttcaacttcaaaaaactcggtttgagaccc 193  Q
    |||||||| | ||| ||||||||||||| | ||||||||||||||||||    
T  23431735 ttagttgaaagtttctctcttcaacttctagaaactcggtttgagaccc 23431783  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 39277553 - 39277601
Alignment:
Q  33 tttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttcca 81  Q
    ||||||||||||||||||| ||| || ||||||||||| ||| ||||||    
T  39277553 tttactcgtgtttctcagccaaaccaaatgtgtcaacaacaattttcca 39277601  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 1167555 - 1167496
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttc 79  Q
    ||||||||||||||||||| |||||||||||| ||| || |||||||||| |||| ||||    
T  1167555 ggtattttggtattttacttgtgtttctcagccaaaccacatgtgtcaacggcaattttc 1167496  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 20360464 - 20360407
Alignment:
Q  22 tattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttc 79  Q
    |||||||||||||||||||||||| || || |||||| ||||||||||| ||| ||||    
T  20360464 tattttggtattttactcgtgtttttctgccaaatcacatgtgtcaacaacaattttc 20360407  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 20550506 - 20550563
Alignment:
Q  22 tattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttc 79  Q
    |||||||||||||||||||||||| || || |||||| ||||||||||| ||| ||||    
T  20550506 tattttggtattttactcgtgtttttctgccaaatcacatgtgtcaacaacaattttc 20550563  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 26606792 - 26606761
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||||    
T  26606792 ggtattttggtattttactcgtgtttctcagc 26606761  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 46043497 - 46043468
Alignment:
Q  22 tattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||    
T  46043497 tattttggtattttactcgtgtttctcagc 46043468  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 46909667 - 46909704
Alignment:
Q  33 tttactcgtgtttctcagctaaatcatatgtgtcaaca 70  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  46909667 tttactcgtgtttctcagctaaaacatatctgtcaaca 46909704  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 47661549 - 47661578
Alignment:
Q  22 tattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||    
T  47661549 tattttggtattttactcgtgtttctcagc 47661578  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 50036828 - 50036787
Alignment:
Q  33 tttactcgtgtttctcagctaaatcatatgtgtcaacagcaa 74  Q
    |||||| |||||||||||| |||||| |||||||||||||||    
T  50036828 tttacttgtgtttctcagccaaatcaaatgtgtcaacagcaa 50036787  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 49502912 - 49502960
Alignment:
Q  34 ttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttccac 82  Q
    |||||||||||||||||| ||  |||||||||||||| ||| |||||||    
T  49502912 ttactcgtgtttctcagccaatgcatatgtgtcaacaacaattttccac 49502960  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 43210374 - 43210317
Alignment:
Q  22 tattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttc 79  Q
    ||||||||||||||||||||||||||| || |||  | ||||||||||| ||||||||    
T  43210374 tattttggtattttactcgtgtttctcggccaaactacatgtgtcaacaacaactttc 43210317  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 72584 - 72615
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||||    
T  72584 ggtattttggtattttactcgtgtttctcagc 72615  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 46439643 - 46439672
Alignment:
Q  22 tattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||    
T  46439643 tattttggtattttactcgtgtttctcagc 46439672  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 19994369 - 19994401
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagct 52  Q
    ||||||||||||||||||| |||||||||||||    
T  19994369 ggtattttggtattttactagtgtttctcagct 19994401  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 47669601 - 47669541
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaactttcc 80  Q
    ||||||||||||||||||||||||||||||||  ||  | ||||||||||| ||| |||||    
T  47669601 ggtattttggtattttactcgtgtttctcagcctaacaaaatgtgtcaacaacaattttcc 47669541  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 47521397 - 47521361
Alignment:
Q  34 ttactcgtgtttctcagctaaatcatatgtgtcaaca 70  Q
    |||||||||||||||||||||| || |||||||||||    
T  47521397 ttactcgtgtttctcagctaaaccaaatgtgtcaaca 47521361  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 17596934 - 17596880
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagctaaatcat-atgtgtcaacagcaa 74  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||    
T  17596934 ggtattttggtattttactggtgtttctcagccaaa-catgatgtgtcaacagcaa 17596880  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 32643448 - 32643477
Alignment:
Q  22 tattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||    
T  32643448 tattttggtattttactcgtgtttctcagc 32643477  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 456134 - 456174
Alignment:
Q  34 ttactcgtgtttctcagctaaatcatatgtgtcaacagcaa 74  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  456134 ttactcgtgtttctcagccaatgcatatgtgtcaacagcaa 456174  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 6928806 - 6928837
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||||    
T  6928806 ggtattttggtattttactcgtgtttctcagc 6928837  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 14456495 - 14456441
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagctaaatcat-atgtgtcaacagcaa 74  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||    
T  14456495 ggtattttggtattttactggtgtttctcagccaaa-cataatgtgtcaacagcaa 14456441  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 14002500 - 14002459
Alignment:
Q  33 tttactcgtgtttctcagctaaatcatatgtgtcaacagcaa 74  Q
    ||||||||||||||||||| ||| || |||||||||||||||    
T  14002500 tttactcgtgtttctcagccaaaccaaatgtgtcaacagcaa 14002459  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 40539176 - 40539205
Alignment:
Q  22 tattttggtattttactcgtgtttctcagc 51  Q
    ||||||||||||||||||||||||||||||    
T  40539176 tattttggtattttactcgtgtttctcagc 40539205  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 6581315 - 6581275
Alignment:
Q  143 atttagttgagaatttttctcttcaacttcaaaaaactcgg 183  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  6581315 atttagttgagaatttctcttttcaatttcaaaaaactcgg 6581275  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 13838503 - 13838557
Alignment:
Q  20 ggtattttggtattttactcgtgtttctcagctaaatcatatgtgtcaacagcaa 74  Q
    ||||||| |||| ||||||||||||||||||| |||  | |||||||||||||||    
T  13838503 ggtatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaacagcaa 13838557  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 30192473 - 30192432
Alignment:
Q  33 tttactcgtgtttctcagctaaatcatatgtgtcaacagcaa 74  Q
    ||||||||||||||||||  |||||| |||||||||||||||    
T  30192473 tttactcgtgtttctcagtcaaatcaaatgtgtcaacagcaa 30192432  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 40622471 - 40622443
Alignment:
Q  19 aggtattttggtattttactcgtgtttct 47  Q
    |||||||||||||||||||||||||||||    
T  40622471 aggtattttggtattttactcgtgtttct 40622443  T

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