View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11894_low_43 (Length: 223)
Name: NF11894_low_43
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_43 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35035266 - 35035061
Alignment:
| Q |
1 |
tgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35035266 |
tgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttg |
35035167 |
T |
|
| Q |
101 |
ttcttcacatccgtttcagccaccacagtttcaagcatgtccacggttgaaatgcaaattttttctaaccctcaattaatcatcattaccatattaatgt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35035166 |
ttcttcacatccgtttcatccaccacagtttcaagcatgtccacggttgaaatggaatttttttctaaccctcaattaatcatcattaccatcttaatgt |
35035067 |
T |
|
| Q |
201 |
tcatag |
206 |
Q |
| |
|
|||||| |
|
|
| T |
35035066 |
tcatag |
35035061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 34974538 - 34974337
Alignment:
| Q |
2 |
gttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttgt |
101 |
Q |
| |
|
||||||||| ||||||||| ||| |||| ||| || |||||||||||||||| |||||| |||||| | ||| |||||||||| |||||||||| |
|
|
| T |
34974538 |
gttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaa---cacctaaaaatttagatttgt |
34974442 |
T |
|
| Q |
102 |
tcttcacatccgtttcagccaccacagtttcaagcatgtccacggttgaaatgcaaattttttctaaccctcaattaatcatcattaccatattaatgtt |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34974441 |
tcttcacatccatttcagccaccacagtttcaagcatgtccacggttgaaatgcaaaatttttctaaccctcaattaatcatcattaccatcttaatgtt |
34974342 |
T |
|
| Q |
202 |
catag |
206 |
Q |
| |
|
||||| |
|
|
| T |
34974341 |
catag |
34974337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 34956077 - 34955875
Alignment:
| Q |
1 |
tgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttg |
100 |
Q |
| |
|
|||||||||| |||||||||| || ||||| ||| || ||||||||||||||||||||||| || ||| ||||||| | ||||| ||||||||| |
|
|
| T |
34956077 |
tgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctctaaaacccttaggtcaaacacaa---aaaaatttagatttg |
34955981 |
T |
|
| Q |
101 |
ttcttcacatccgtttcagccaccacagtttcaagcatgtccacggttgaaatgcaaattttttctaaccctcaattaatcatcattaccatattaatgt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
34955980 |
ttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatgggaattttttctaacactcaattaatcatcattaccatcttaatgt |
34955881 |
T |
|
| Q |
201 |
tcatag |
206 |
Q |
| |
|
|||||| |
|
|
| T |
34955880 |
tcatag |
34955875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University