View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_5 (Length: 870)
Name: NF11894_low_5
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 404 - 857
Target Start/End: Complemental strand, 20529745 - 20529293
Alignment:
| Q |
404 |
aaattggagtgaaagcttgagattcacatgttctattattacaattaccaatagatttgttggtctatccctcnnnnnnntagatttgttggtcttacgt |
503 |
Q |
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| T |
20529745 |
aaattggagtgaaagcgtgagattcacatgttctattattacaattaccaatagatttgttggtctatccctcaaaaaaatagatttgttggtcttacgt |
20529646 |
T |
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| Q |
504 |
atgggtactccacagtccacacccatttattttttcatgaacacaacatttattcgactccaaatgaaaattgtagattaaaataaatgtgttgcacttc |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20529645 |
atgggtactccacagtccacacccatttattttttcatgaacacaacatttattcgactccaaatgaaaattgtagattaaaataaatgtgttgcacttc |
20529546 |
T |
|
| Q |
604 |
tgttttggtaggtacatttcatatgctaccttgatatttaatatgcgagtatgtaagtttgaacctgagacattgtttaagtnnnnnnnnnncttttgta |
703 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20529545 |
tgttttggtaggtacatttcatatgctaccttgatatttaatatgcgagtatgtaagtttgaacctgagacattgtttaagt-aaaaaaaaacttttgta |
20529447 |
T |
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| Q |
704 |
cgaagacttgtgcaagtattagtaagacaaatgcctgacacgtggttctgaaattcaagaactctaaaaggggtgccgctaaaagtttctttgtttgttt |
803 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20529446 |
cgaagacttgtgcaagtattagtaagacaaatgcttgacacgtggttctgaaattcaagaactctaaaaggggtgccgctaaaagtttctttgtttgttt |
20529347 |
T |
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| Q |
804 |
aacgtctgcttcttaatcggatgcggttaaagattacttgctttggaggagagt |
857 |
Q |
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| T |
20529346 |
aacgtctgcttcttaatcggatgcgattaaagataacttgctttggaggagagt |
20529293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 20530165 - 20529907
Alignment:
| Q |
9 |
agcagagacatccatcacattcttaaaatcattagatttgatagtgccatcaggaaacacctcaatgttatatttcttcccggtccgatcatcgacaatg |
108 |
Q |
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| T |
20530165 |
agcagagacatccatcacattcttaaaatcattagatttgatagtcccatcaggaaacacctcaatgttatatttcttcccggttcgatcatcgacaatg |
20530066 |
T |
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| Q |
109 |
gtgagggttcctttgagattcaatggaggggagattctagaggaagcggaaaggtggagaggttggatgagtgcgtaggaggaggttgtggagggaggaa |
208 |
Q |
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| T |
20530065 |
gtgagggttcctttgagattcaatggaggggagattctagaggaagcggaaaggtggagaggttggatgagtgcggaggaggaggttgtggagggaggaa |
20529966 |
T |
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| Q |
209 |
gcaagtgagctgtgagggtggctaaacgattatgtgcagcatcgtgcacgttcgattcc |
267 |
Q |
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| T |
20529965 |
gcaagtgagctatgagggtggctaaacgattatgtgcagcatcgtgcaccttcgattcc |
20529907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 18169845 - 18169596
Alignment:
| Q |
18 |
atccatcacattcttaaaatcattagatttgatagtgccatcaggaaacacctcaatgttatatttcttcccggtccgatcatcgacaatggtgagggtt |
117 |
Q |
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|||| |||| ||||| |||||||| | ||||| |||||||||||| | || ||||| |||| |||||||| || || ||||| |||| |||||| ||| |
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| T |
18169845 |
atccctcaccttcttgaaatcattggctttgacggtgccatcaggagagacttcaatactatacttcttcccagtacgttcatcaacaacggtgagcgtt |
18169746 |
T |
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| Q |
118 |
cctttgagattcaatggaggggagattctagaggaagcggaaaggtggagaggttggatgagtgcgtaggaggaggttgtggagggaggaagcaagtgag |
217 |
Q |
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| T |
18169745 |
cctttgacattggacggtggagagatcccagaggaagcggagaggtggagaggatggaggagtgcggcggaggaggtggtggaggaaggaagcaagtgag |
18169646 |
T |
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| Q |
218 |
ctgtgagggtggctaaacgattatgtgcagcatcgtgcacgttcgattcc |
267 |
Q |
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|||||||||||| |||||| || ||||||| ||||||| ||||||||| |
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| T |
18169645 |
ctgtgagggtggataaacggttccgtgcagcgtcgtgcatcttcgattcc |
18169596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 20529839 - 20529775
Alignment:
| Q |
340 |
ctttcttattctttgaacaattgaatggattcgagaaaaaaggatcggagtagtagtatttagta |
404 |
Q |
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| T |
20529839 |
ctttcttattctttgaacaattgaatggattcgagaaaaaaggatcggagtagtggtatttagta |
20529775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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