View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11894_low_9 (Length: 592)
Name: NF11894_low_9
Description: NF11894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11894_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 15 - 576
Target Start/End: Complemental strand, 4749080 - 4748517
Alignment:
| Q |
15 |
gacatcaaaagtgaactttttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgaga |
114 |
Q |
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| T |
4749080 |
gacatcaaaagtgaactttttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgaga |
4748981 |
T |
|
| Q |
115 |
ccaatataattgtacaattcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttcc |
214 |
Q |
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| T |
4748980 |
ccaatataattgtacaattcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttcc |
4748881 |
T |
|
| Q |
215 |
ctgcaagtgccatagctgaagcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtttctggcgagcaaactatgatggttgg |
314 |
Q |
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| T |
4748880 |
ctgcaagtgccatagctgaagcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtctctggcgagcaaactatgacggttgg |
4748781 |
T |
|
| Q |
315 |
atacccaaacaaatgtgtcctgtacatacctgtcctgccatatctgtattttataaaataaaaaccatccaaagttagtcacatttatgagcatccacga |
414 |
Q |
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| T |
4748780 |
atacccaaacaaatgtgtcctgtacatacctgtcctgccatatctgtattttataaaataaaaaccatccaaagttagtcacatttatgagcatccacga |
4748681 |
T |
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| Q |
415 |
ctatagatgtttttgcactatgttttgagtaaattttcttgagtagtatatgttggaacattggtggaaatataaaaagtggtct--taagcagagtcta |
512 |
Q |
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| T |
4748680 |
ctatagatgtttttgcactatgttttgagtaaattttcttgagtagtatatgttggaacattggtggaaatataaaaagtggtcttataagcagagtctt |
4748581 |
T |
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| Q |
513 |
ttttgataatttgtgcctttgtctttggagaaattagatattaaaatgatattaacatcatatt |
576 |
Q |
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| T |
4748580 |
ttttgatattttgtgcctttgtctttggagaaattagatattaaaatgatattaatatcatatt |
4748517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 38 - 359
Target Start/End: Complemental strand, 4756895 - 4756571
Alignment:
| Q |
38 |
tctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaat---tc |
134 |
Q |
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||||||| ||||||||| ||||||||| |||||||| | |||||||||| |||||| || |||| || ||||||| ||||||| | ||||| || |
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| T |
4756895 |
tctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgcttc |
4756796 |
T |
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| Q |
135 |
gtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaa |
234 |
Q |
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| T |
4756795 |
gtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaa |
4756696 |
T |
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| Q |
235 |
gcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcc |
334 |
Q |
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||||||||| |||||||| || ||||| |||| || ||||||||||| ||||| | ||| ||||||||| ||||| |||||||||||||| | |
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| T |
4756695 |
tgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctggtgtgcatactatgatgcttggactaccaaacaaatgtgttc |
4756596 |
T |
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| Q |
335 |
tgtacatacctgtcctgccatatct |
359 |
Q |
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| T |
4756595 |
tatacatacctgtctttccatatct |
4756571 |
T |
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