View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_high_11 (Length: 405)
Name: NF11895_high_11
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 30262609 - 30262236
Alignment:
| Q |
18 |
attcaaagtcgtcttcttgtgaagatagtagttctgtgacttcgacttcaactgggtcttaccctcctcatcataggtatcagaattgtagggatagtga |
117 |
Q |
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| T |
30262609 |
attcaaagtcgtcttcttgtgaagatagtagttctgtgacttccacttcaactgggtcttaccctcctcatcataggtatcagaattgtagggatagtga |
30262510 |
T |
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| Q |
118 |
tgatgaagaagaagaagtacttgatgattgggctagtgatcttagtgatgatgaggaggaggatgatggagttagagaagaaggtgatgaattgggtgtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262509 |
tgatgaagaagaagaagtacttgatgattgggctagtgatcttagtgatgatgaggaggaggatgatggagttagagaagaaggtgatgaattgggtgtg |
30262410 |
T |
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| Q |
218 |
gagtttgaagaagatggaatgggatactccaagttgagggtaagagatgatattattgatcatgtgtttactgaggaagtggatagccctattcctactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262409 |
gagtttgaagaagatggaatgggatactccaagttgagggtaagagatgatattattgatcatgtgtttactgaggaagtggatagccctattcctactt |
30262310 |
T |
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| Q |
318 |
gtgaaagggatgtggagtcaattggagtcaatttcaatgctagagacagaagtgtttatgttcattctgtgctg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262309 |
atgaaagggatgtggagtcaattggagtcaatttcaatgctagagacagaagtgtttatgttcattctgtgctg |
30262236 |
T |
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