View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_high_8 (Length: 469)
Name: NF11895_high_8
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 4474041 - 4473582
Alignment:
| Q |
1 |
gtaactgactctgacttcatgtctatttgcaaggttagtaatttgttatatttttatatatata----cacatatatttagtgtgttacnnnnnnnnata |
96 |
Q |
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| T |
4474041 |
gtaactgactctgacttcatgtctatttgcaaggttagtaatttgttatatttttatatatatatatacacatatatttagtgtgttactttttt--ata |
4473944 |
T |
|
| Q |
97 |
tgaccaaatcatataatgtgttaattttcacaaatcgtagctagatcctattattacacatggaatatgaaaattttgtattagatgaatgttttattaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
4473943 |
tgaccaaatcatataatgtgttaattttcacaaatcgtagctagatcctattgttacacatggaatatgaaaattaagtattcgatgaatgttttattaa |
4473844 |
T |
|
| Q |
197 |
tcaatg-tcaaaattaattggttttatatttcatcttatacnnnnnnncatatagaatcagctcatgagttggacaatataatagactataatttagaat |
295 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4473843 |
tcaatggtcaaaattaattagttttatatttcatcttatacaaaaaaacatatagaatcagctcatgagttggacaatataatagactataatttagaat |
4473744 |
T |
|
| Q |
296 |
ggatggatgaagaagttagatgatatttaatcaaaacaattttgacaattcattctttnnnnnnnntatatattggccattgaggtacatttgtgtagtc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
4473743 |
ggatggatgaagaagttagatgatatttaatcaaaacaattttgacaattcattctttaaaaaaaatatatattggccattgatgtacatttgtgtagtc |
4473644 |
T |
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| Q |
396 |
atttaattcgctcacctaatatatcagtatctatctgcatatttatttatcatgtttctgtg |
457 |
Q |
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| T |
4473643 |
atttaattcgctcacctaatatatcagtatctatctgcatatttatttatcatgtttctgtg |
4473582 |
T |
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