View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11895_high_9 (Length: 439)
Name: NF11895_high_9
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 2543687 - 2544090
Alignment:
| Q |
20 |
atcagaaataaatgcacttaaaaatgcaaggaattagtttccttgtcaagagtagtctcagaaatattaggttagcaaacatttcaaattaggccctaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2543687 |
atcagaaataaatgcacttaaaaatgcaaggaattagtttccttgtcaagagtagtctcagaaatattaggttagcaaacatttcaaattaggccctaaa |
2543786 |
T |
|
| Q |
120 |
gttgaatacgtataattcaaattaatttctaaaggactcattcaagatgaaattgtttgattcaacaatatcataagttgactcataatggttgacagaa |
219 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2543787 |
gttgaatacttataattcaaattagtttctaaaggactcattcaagatgaaattgtttgattcaacaatatcataagttgactcataatgcttgacagaa |
2543886 |
T |
|
| Q |
220 |
attacaaacataatcataccatcatttcataaccatttggtaagctaaatgcagtatgtatcttatgataagaatcaaaccaattcaatatcatgtgtga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2543887 |
attacaaacataatcataccatcatttcataaccatttggtaagctaaatgtagtatgtatattatgataagaatcaaaccaattcaatatcatgtgtga |
2543986 |
T |
|
| Q |
320 |
atatgacctactacccatactttactacctctacttgttctataagaaaatacatgatttatacctttaatggatttatacctatgagaaaatacatgat |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2543987 |
atatgacctactacccatacttgactacctctacttgttctataagaaaatacatgatttatacctttaatggatttatacctatgagaaaatacatgat |
2544086 |
T |
|
| Q |
420 |
ttat |
423 |
Q |
| |
|
|||| |
|
|
| T |
2544087 |
ttat |
2544090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University