View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_low_10 (Length: 435)
Name: NF11895_low_10
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 41538916 - 41538513
Alignment:
| Q |
14 |
gaagtataatacagataattagatagaacataatccacccaacgcggagaatatgcaccaccaccaccacttccaatttcagacacagcattttccattt |
113 |
Q |
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| T |
41538916 |
gaagtataatacagataattagatagaacataatccacccaacgcggcgaatatgcaccaccaccaccacttccaatttcagacacagcattttccattt |
41538817 |
T |
|
| Q |
114 |
tttcaccgttcattgcatcaagctccgaaaactcatcacccttaatactccaaggctccaaataactaatccaaacataaaacacctgagaaacattctt |
213 |
Q |
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| T |
41538816 |
tttcaccgttcattgcatcaagctctgaaaactcatcacccttaatactccaaggctccaaataactaatccaaacataaaacacctgagaaacattctt |
41538717 |
T |
|
| Q |
214 |
aactgaagctgccatcggacaaaacaacaacgtcctcaacaaaaacctatacaaaggcctctgcaaacactgattccaacagccataacctaaatcctta |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538716 |
aactgaagctgccatcggacaaaacaacaatgtcctcagcaaaaacctatacaaaggcctctgcaaacactgattccaacagccataacctaaatcctta |
41538617 |
T |
|
| Q |
314 |
ttcttcgaaacctctaaacttctccatctaggactagaattgtaactataaccaaaatctccattctcacaagacgctgctaaagtgctcaaacccaaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538616 |
ttcttcgaaacctctaaacttctccatctaggactagaattgtaactataaccaaaatctccattctcacaagacgctgctaaagtgctcaaacccaaat |
41538517 |
T |
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| Q |
414 |
acct |
417 |
Q |
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|||| |
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| T |
41538516 |
acct |
41538513 |
T |
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