View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11895_low_12 (Length: 395)

Name: NF11895_low_12
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11895_low_12
NF11895_low_12
[»] chr4 (5 HSPs)
chr4 (73-395)||(2543372-2543695)
chr4 (20-73)||(2541472-2541525)
chr4 (245-390)||(2553605-2553742)
chr4 (18-51)||(647831-647864)
chr4 (123-176)||(32992651-32992704)
[»] chr8 (4 HSPs)
chr8 (137-215)||(35287716-35287794)
chr8 (136-215)||(28783060-28783139)
chr8 (133-166)||(36205244-36205277)
chr8 (18-73)||(12575904-12575960)
[»] scaffold0567 (1 HSPs)
scaffold0567 (18-73)||(6414-6470)
[»] chr6 (8 HSPs)
chr6 (18-73)||(32704858-32704914)
chr6 (18-51)||(13017817-13017850)
chr6 (18-51)||(14790203-14790236)
chr6 (18-51)||(14795231-14795264)
chr6 (18-51)||(15534673-15534706)
chr6 (18-51)||(15537868-15537901)
chr6 (18-51)||(19665292-19665325)
chr6 (18-73)||(16883261-16883317)
[»] chr5 (2 HSPs)
chr5 (18-73)||(11989422-11989478)
chr5 (18-51)||(34405433-34405466)
[»] chr1 (7 HSPs)
chr1 (18-73)||(13492847-13492903)
chr1 (133-209)||(43445969-43446045)
chr1 (133-177)||(45266872-45266916)
chr1 (18-71)||(34065929-34065983)
chr1 (18-51)||(10759706-10759739)
chr1 (17-73)||(13495571-13495628)
chr1 (18-51)||(16190804-16190837)
[»] chr7 (11 HSPs)
chr7 (20-73)||(3862500-3862554)
chr7 (18-51)||(6966732-6966765)
chr7 (17-58)||(9765381-9765422)
chr7 (18-74)||(11279077-11279134)
chr7 (18-51)||(17863722-17863755)
chr7 (18-51)||(17866981-17867014)
chr7 (18-51)||(23760236-23760269)
chr7 (135-216)||(31835191-31835272)
chr7 (18-74)||(46846913-46846970)
chr7 (18-73)||(294449-294505)
chr7 (135-215)||(29538558-29538638)
[»] chr2 (3 HSPs)
chr2 (17-51)||(40017561-40017595)
chr2 (135-176)||(12517749-12517790)
chr2 (18-51)||(31527974-31528007)
[»] scaffold0665 (1 HSPs)
scaffold0665 (18-51)||(272-305)
[»] scaffold0194 (1 HSPs)
scaffold0194 (123-216)||(13030-13123)
[»] chr3 (4 HSPs)
chr3 (18-51)||(11139196-11139229)
chr3 (22-51)||(13979079-13979108)
chr3 (18-51)||(22626940-22626973)
chr3 (134-214)||(47454612-47454692)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 73 - 395
Target Start/End: Original strand, 2543372 - 2543695
Alignment:
Q  73 ttggatagtcattagtttatttt-ctgaagaatcgaacattatcatgcacaaaattgatatcggggagaatcgaccatgagaccttgaggaggagaaaac 171  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  2543372 ttgggtagtcattagtttatttttctgaagaatcgaacattatcatgcacaaaattgatatcggggagaatcgaacatgagactttgaggaggagaaaac 2543471  T
Q  172 tccaaaaaatcaatccaacaccacaaaaccaacccaagtgggttgttgtgtagtcattattattacgagaaactgaattattctagccaacatttcaaca 271  Q
     |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2543472 cccaagaacccaatccaacaccacaaaaccaacccaagtgggttgttgtgtagtcattattattacgagaaactgaattattcttgccaacatttcaaca 2543571  T
Q  272 ggaaatatcatatttgaccaacagaccaaaaattggatggccaagctcattgcatacattgatatggtactatacattattgttgaaaattttaataatg 371  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2543572 ggaaatatcatattttacctacagaccaaaaattggatggccaagctcattgcatacattgatatggtactatacattattgttgaaaattttaataatg 2543671  T
Q  372 aaacaatgataggctatcagaaat 395  Q
    ||||||||||||||||||||||||    
T  2543672 aaacaatgataggctatcagaaat 2543695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 2541472 - 2541525
Alignment:
Q  20 atgtaatcttatgggaaccctaatttgttgaatttctttcatatcaatgaaagt 73  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  2541472 atgtaatcttatgggaactctaatttgttgaattcctttcatatcaataaaagt 2541525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 390
Target Start/End: Original strand, 2553605 - 2553742
Alignment:
Q  245 tgaattattctagccaacatttcaacaggaaatatcatatttgaccaacagaccaaaaattggatggccaagctcattgcatacattgatatggtactat 344  Q
    ||||||||||| | || ||||| || |||||||||||||||||| || |||||||||| ||   ||| ||||||| | |||||||||||     ||||||    
T  2553605 tgaattattcttgtcagcattt-aataggaaatatcatatttgagcagcagaccaaaactt--ttggacaagctcgtagcatacattga-----tactat 2553696  T
Q  345 acattattgttgaaaattttaataatgaaacaatgataggctatca 390  Q
    ||||||||||  || ||||| |||||||||  |||||||| |||||    
T  2553697 acattattgtaaaacattttgataatgaaattatgataggatatca 2553742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 647864 - 647831
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  647864 tgatgtaatcctatgggaaccctaatttgttgaa 647831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 32992704 - 32992651
Alignment:
Q  123 aaattgatatcggggagaatcgaccatgagaccttgaggaggagaaaactccaa 176  Q
    ||||||| | ||||||||||||| | |||||||||||||||||| | |||||||    
T  32992704 aaattgacaccggggagaatcgaacttgagaccttgaggaggagcacactccaa 32992651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 35287794 - 35287716
Alignment:
Q  137 gagaatcgaccatgagaccttgaggaggagaaaactccaaaaaatcaatccaacaccacaaaaccaacccaagtgggtt 215  Q
    ||||||||| ||||| |||||||||||||| | |||||||||  |||| |||||||||| |  || |||||||||||||    
T  35287794 gagaatcgaacatgataccttgaggaggagcacactccaaaatctcaagccaacaccaccaggcctacccaagtgggtt 35287716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 28783139 - 28783060
Alignment:
Q  136 ggagaatcgaccatgagaccttgaggaggagaaaactccaaaaaatcaatccaacaccacaaaaccaacccaagtgggtt 215  Q
    |||||||||| |||||||||||||||||||| | ||||| |    |||| |||| ||||| || ||||||||||||||||    
T  28783139 ggagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 36205277 - 36205244
Alignment:
Q  133 cggggagaatcgaccatgagaccttgaggaggag 166  Q
    ||||||||||||| ||||||||||||||||||||    
T  36205277 cggggagaatcgaacatgagaccttgaggaggag 36205244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 12575960 - 12575904
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    |||||||||| ||| ||||||||||||||||||| | ||||  ||||||||||||||    
T  12575960 tgatgtaatcctataggaaccctaatttgttgaactcctttgaatatcaatgaaagt 12575904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 6470 - 6414
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    ||||||||||||||||||||| |||||||||||| | ||||  ||||||||||||||    
T  6470 tgatgtaatcttatgggaaccttaatttgttgaactcctttgaatatcaatgaaagt 6414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 32704914 - 32704858
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    |||||||||| ||||||||||||||||||||||| | ||||  ||||||||||||||    
T  32704914 tgatgtaatcctatgggaaccctaatttgttgaactcctttgaatatcaatgaaagt 32704858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 13017850 - 13017817
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  13017850 tgatgtaatcctatgggaaccctaatttgttgaa 13017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 14790203 - 14790236
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  14790203 tgatgtaatcctatgggaaccctaatttgttgaa 14790236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 14795231 - 14795264
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  14795231 tgatgtaatcctatgggaaccctaatttgttgaa 14795264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 15534673 - 15534706
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  15534673 tgatgtaatcctatgggaaccctaatttgttgaa 15534706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 15537868 - 15537901
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  15537868 tgatgtaatcatatgggaaccctaatttgttgaa 15537901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 19665325 - 19665292
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  19665325 tgatgtaatcctatgggaaccctaatttgttgaa 19665292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 16883261 - 16883317
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    ||||||||| ||||| |||||||||||||||||| | ||||  ||||||||||||||    
T  16883261 tgatgtaattttatgagaaccctaatttgttgaactcctttgaatatcaatgaaagt 16883317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 11989478 - 11989422
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    ||||||||| |||||||||||||||||||||||| | ||||  ||||||||||||||    
T  11989478 tgatgtaattttatgggaaccctaatttgttgaactcctttgaatatcaatgaaagt 11989422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 34405433 - 34405466
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  34405433 tgatgtaatcctatgggaaccctaatttgttgaa 34405466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 13492847 - 13492903
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    |||||||||||||||||||||||| ||||||||| | ||||  ||||||||||||||    
T  13492847 tgatgtaatcttatgggaaccctagtttgttgaactcctttgaatatcaatgaaagt 13492903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 43446045 - 43445969
Alignment:
Q  133 cggggagaatcgaccatgagaccttgaggaggagaaaactccaaaaaatcaatccaacaccacaaaaccaacccaag 209  Q
    ||||||||||||| |||||||||||||||||||| | |||||||  |  ||| |||||||||  || ||||||||||    
T  43446045 cggggagaatcgaacatgagaccttgaggaggagcacactccaaggacccaagccaacaccatcaagccaacccaag 43445969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 45266916 - 45266872
Alignment:
Q  133 cggggagaatcgaccatgagaccttgaggaggagaaaactccaaa 177  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||    
T  45266916 cggggagaatcgaacctgagaccttgaggaggagcaaactccaaa 45266872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 34065929 - 34065983
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa-tttctttcatatcaatgaaa 71  Q
    ||||||||||||||||||| |||||||||||||| ||| ||  ||||||||||||    
T  34065929 tgatgtaatcttatgggaatcctaatttgttgaacttttttgaatatcaatgaaa 34065983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 10759706 - 10759739
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  10759706 tgatgtaatcctatgggaaccctaatttgttgaa 10759739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 13495571 - 13495628
Alignment:
Q  17 atgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    ||||||||||| ||||||||||||| ||||||||| | ||||  ||||||||||||||    
T  13495571 atgatgtaatcctatgggaaccctagtttgttgaactcctttgaatatcaatgaaagt 13495628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 16190837 - 16190804
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||||||| |||||||||||||||||||    
T  16190837 tgatgtaatcttataggaaccctaatttgttgaa 16190804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 3862554 - 3862500
Alignment:
Q  20 atgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    ||||||||||||| |||||||||||||||||| | ||||  ||||||||||||||    
T  3862554 atgtaatcttatgagaaccctaatttgttgaactcctttaaatatcaatgaaagt 3862500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 6966732 - 6966765
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  6966732 tgatgtaatcctatgggaaccctaatttgttgaa 6966765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 9765381 - 9765422
Alignment:
Q  17 atgatgtaatcttatgggaaccctaatttgttgaatttcttt 58  Q
    ||||||||||| |||| |||||||||||||||||| ||||||    
T  9765381 atgatgtaatcctatgagaaccctaatttgttgaacttcttt 9765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 11279077 - 11279134
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagtt 74  Q
    |||||||| | ||||||||||||||||||||||| | ||||  |||||||||||||||    
T  11279077 tgatgtaaccctatgggaaccctaatttgttgaactcctttgaatatcaatgaaagtt 11279134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 17863755 - 17863722
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  17863755 tgatgtaatcctatgggaaccctaatttgttgaa 17863722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 17867014 - 17866981
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  17867014 tgatgtaatcctatgggaaccctaatttgttgaa 17866981  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 23760269 - 23760236
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  23760269 tgatgtaatcctatgggaaccctaatttgttgaa 23760236  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 31835272 - 31835191
Alignment:
Q  135 gggagaatcgaccatgagaccttgaggaggagaaaactccaaaaaatcaatccaacaccacaaaaccaacccaagtgggttg 216  Q
    |||| |||||| | |||||||||||||||||| | |||||||  |  ||| |||||||||| |  |||||||||||||||||    
T  31835272 gggataatcgaacctgagaccttgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggttg 31835191  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 46846970 - 46846913
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagtt 74  Q
    |||||||| | ||||||||||||||||||||||| | ||||  |||||||||||||||    
T  46846970 tgatgtaaccctatgggaaccctaatttgttgaactcctttgaatatcaatgaaagtt 46846913  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 294449 - 294505
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaatttcttt-catatcaatgaaagt 73  Q
    |||||||||| ||||||||||||| ||||||||| | ||||  ||||||||||||||    
T  294449 tgatgtaatcctatgggaaccctagtttgttgaactcctttgaatatcaatgaaagt 294505  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 29538558 - 29538638
Alignment:
Q  135 gggagaatcgaccatgagaccttgaggaggagaaaactccaaaaaatcaatccaacaccacaaaaccaacccaagtgggtt 215  Q
    ||||||||||| | |||||||||||| ||||| | |||||||    ||||  |||||||||||  ||||||||||||||||    
T  29538558 gggagaatcgaacttgagaccttgagaaggagtatactccaatgtctcaagtcaacaccacaatgccaacccaagtgggtt 29538638  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 40017561 - 40017595
Alignment:
Q  17 atgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  40017561 atgatgtaatcctatgggaaccctaatttgttgaa 40017595  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 12517749 - 12517790
Alignment:
Q  135 gggagaatcgaccatgagaccttgaggaggagaaaactccaa 176  Q
    ||||||||| | |||||||||||||||||||| |||||||||    
T  12517749 gggagaatcaaacatgagaccttgaggaggagcaaactccaa 12517790  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 31527974 - 31528007
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  31527974 tgatgtaatcctatgggaaccctaatttgttgaa 31528007  T

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Target: scaffold0665 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 305 - 272
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  305 tgatgtaatcctatgggaaccctaatttgttgaa 272  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 13030 - 13123
Alignment:
Q  123 aaattgatatcggggagaatcgaccatgagaccttgaggaggagaaaactccaaaaaatcaatccaacaccacaaaaccaacccaagtgggttg 216  Q
    ||||||| ||||| ||||||||| | |||||||||||||||||| | ||||| | |  |||| |||| ||||| || |||||| ||||| ||||    
T  13030 aaattgacatcggagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaataccaccaagccaaccgaagtgagttg 13123  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 11139229 - 11139196
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  11139229 tgatgtaatcctatgggaaccctaatttgttgaa 11139196  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 13979079 - 13979108
Alignment:
Q  22 gtaatcttatgggaaccctaatttgttgaa 51  Q
    ||||||||||||||||||||||||||||||    
T  13979079 gtaatcttatgggaaccctaatttgttgaa 13979108  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 22626973 - 22626940
Alignment:
Q  18 tgatgtaatcttatgggaaccctaatttgttgaa 51  Q
    |||||||||| |||||||||||||||||||||||    
T  22626973 tgatgtaatcctatgggaaccctaatttgttgaa 22626940  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 47454612 - 47454692
Alignment:
Q  134 ggggagaatcgaccatgagaccttgaggaggagaaaactccaaaaaatcaatccaacaccacaaaaccaacccaagtgggt 214  Q
    |||||||||||| | |||||||| ||||||||| | ||||||| |  |||| |||| ||||| | | ||||||||||||||    
T  47454612 ggggagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

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