View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11895_low_13 (Length: 392)

Name: NF11895_low_13
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11895_low_13
NF11895_low_13
[»] chr2 (3 HSPs)
chr2 (20-184)||(7564925-7565092)
chr2 (248-377)||(7564730-7564859)
chr2 (71-105)||(40912915-40912949)
[»] chr5 (5 HSPs)
chr5 (248-377)||(3013642-3013771)
chr5 (20-184)||(3013837-3013990)
chr5 (20-63)||(13887640-13887683)
chr5 (71-105)||(3014235-3014269)
chr5 (71-105)||(13887928-13887962)
[»] chr6 (3 HSPs)
chr6 (248-377)||(7520972-7521105)
chr6 (107-178)||(26820070-26820141)
chr6 (108-177)||(18309461-18309529)
[»] chr8 (1 HSPs)
chr8 (104-181)||(1873074-1873151)
[»] chr4 (1 HSPs)
chr4 (108-177)||(22722344-22722412)
[»] chr3 (2 HSPs)
chr3 (71-105)||(13007554-13007588)
chr3 (20-57)||(13007272-13007309)
[»] chr7 (1 HSPs)
chr7 (20-65)||(44064358-44064403)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 7565092 - 7564925
Alignment:
Q  20 gtatccatggggtgaagaagctttcgccaaagctcgccgtagagattctcttttcgttgt---agtggtgatgatgggtaagtgcttttcgtatcattca 116  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  7565092 gtatccatggggtgaagaagctttcgccgaagctcgccgcagagattctcttttcgttgttgtagtggtgatgatgggtaagtgcttttcgtatcattca 7564993  T
Q  117 ctcctcccttgttcccaaattgttctcaaatcacaaagattgaggtgaggttcagtttgttcattcta 184  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7564992 ctccgcccttgttcccaaattgttctcaaatcacaaagattgaggtgaggttcagtttgtttattcta 7564925  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 7564859 - 7564730
Alignment:
Q  248 catcttaagtttgctgctgaggaatgttgtaactgcatttgatttacaagacagttgtgtgatgtcaaacctttgtttatctttgttatgtttttgaatt 347  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7564859 catcttaattttgctgctgaggaatgttgtaactgcatttgatttacaagacagttttgtgatgtcaaacctttgtttatctttgttatgtttttgaatt 7564760  T
Q  348 tttgttcgtaatatctgtccttggttgtgt 377  Q
    ||||||||||||||||||||||| ||||||    
T  7564759 tttgttcgtaatatctgtccttgattgtgt 7564730  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 40912949 - 40912915
Alignment:
Q  71 tttcgttgtagtggtgatgatgggtaagtgctttt 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  40912949 tttcgttgcagtggtgatgatgggtaagtgctttt 40912915  T

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Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 3013771 - 3013642
Alignment:
Q  248 catcttaagtttgctgctgaggaatgttgtaactgcatttgatttacaagacagttgtgtgatgtcaaacctttgtttatctttgttatgtttttgaatt 347  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3013771 catcttaattttgctgctgaggaatgttgtaactgcatttgatttacaagacagttgtgtgatgtcaaacctttgtttatctttgttatgtttttgaatt 3013672  T
Q  348 tttgttcgtaatatctgtccttggttgtgt 377  Q
    |||||| |||||||||||||||| ||||||    
T  3013671 tttgtttgtaatatctgtccttgattgtgt 3013642  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 3013990 - 3013837
Alignment:
Q  20 gtatccatggggtgaagaagctttcgccaaagctcgccgtagagattctcttttcgttgtagtggtgatgatgggtaagtgcttttcgtatcattcactc 119  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3013990 gtatccatagggtgaagaagctttcgccaaagctcgccgcagagattctcttttcgttgtagtggtgatgatgggtaagtgcttttcgtatcattcactc 3013891  T
Q  120 ctcccttgttcccaaattgttctcaaatcacaaagattgaggtgaggttcagtttgttcattcta 184  Q
    |||||||||||||           ||||||||||||||| |||||||||||||||||||||||||    
T  3013890 ctcccttgttccc-----------aaatcacaaagattgcggtgaggttcagtttgttcattcta 3013837  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 13887683 - 13887640
Alignment:
Q  20 gtatccatggggtgaagaagctttcgccaaagctcgccgtagag 63  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  13887683 gtatccatggggtgaagaagctttcgccgaagctcgccgcagag 13887640  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 3014235 - 3014269
Alignment:
Q  71 tttcgttgtagtggtgatgatgggtaagtgctttt 105  Q
    |||||||||||||||||||||||||||||||||||    
T  3014235 tttcgttgtagtggtgatgatgggtaagtgctttt 3014269  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 13887928 - 13887962
Alignment:
Q  71 tttcgttgtagtggtgatgatgggtaagtgctttt 105  Q
    |||||||||||||||||||||||||||||||||||    
T  13887928 tttcgttgtagtggtgatgatgggtaagtgctttt 13887962  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 248 - 377
Target Start/End: Original strand, 7520972 - 7521105
Alignment:
Q  248 catcttaagtttgctgctgaggaatgttgtaactgcatttgatttacaagacagttgtgtgatgtcaaacctt-tgtttatcttt---gttatgtttttg 343  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||| ||| | |||||||||   ||||||||||||    
T  7520972 catcttaattttgctgctgaggaatgttgtaattgcattttatttacaagacagttttgttatgtcaaatcttatatttatctttatggttatgtttttg 7521071  T
Q  344 aatttttgttcgtaatatctgtccttggttgtgt 377  Q
    |||||||||||||||||| |||||||| ||||||    
T  7521072 aatttttgttcgtaatatttgtccttgattgtgt 7521105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 26820070 - 26820141
Alignment:
Q  107 gtatcattcactcctcccttgttcccaaattgttctcaaatcacaaagattgaggtgaggttcagtttgttc 178  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||  || |||||||||||||    
T  26820070 gtatcattcactcctcccttgttcccaaatcgttctcaaatcacaaagattgagacgaagttcagtttgttc 26820141  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 18309461 - 18309529
Alignment:
Q  108 tatcattcactcctcccttgttcccaaattgttctcaaatcacaaagattgaggtgaggttcagtttgtt 177  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  18309461 tatcattcactcctccctttttcc-aaatcgttctcaaatcacaaagattgaggtgaggttcagtttgtt 18309529  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 1873074 - 1873151
Alignment:
Q  104 ttcgtatcattcactcctcccttgttcccaaattgttctcaaatcacaaagattgaggtgaggttcagtttgttcatt 181  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1873074 ttcgtatgattcactcctcccttgttcccaaatcgttctcaaatcacaaagattgaggtgaggttcagtttgttcatt 1873151  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 22722344 - 22722412
Alignment:
Q  108 tatcattcactcctcccttgttcccaaattgttctcaaatcacaaagattgaggtgaggttcagtttgtt 177  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||    
T  22722344 tatcattcactcctccctttttcc-aaatcgttcccaaatcacaaagattgaggtgaggttcagtttgtt 22722412  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 13007554 - 13007588
Alignment:
Q  71 tttcgttgtagtggtgatgatgggtaagtgctttt 105  Q
    |||||||||||||||||||||||||||||||||||    
T  13007554 tttcgttgtagtggtgatgatgggtaagtgctttt 13007588  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 13007309 - 13007272
Alignment:
Q  20 gtatccatggggtgaagaagctttcgccaaagctcgcc 57  Q
    |||||||||||||||||||||||||||| |||||||||    
T  13007309 gtatccatggggtgaagaagctttcgccgaagctcgcc 13007272  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 44064358 - 44064403
Alignment:
Q  20 gtatccatggggtgaagaagctttcgccaaagctcgccgtagagat 65  Q
    |||||||||||||||||||||||||||  |||| ||||| ||||||    
T  44064358 gtatccatggggtgaagaagctttcgctgaagcacgccgcagagat 44064403  T

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