View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_low_14 (Length: 338)
Name: NF11895_low_14
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 45350318 - 45350643
Alignment:
| Q |
13 |
gaacaaaataacttctgtatttggcaatgtaacaggaccagaacatagaggttcaccccaaccaaaatcagtagtgtcaaaagacaatttagtccaagtt |
112 |
Q |
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| T |
45350318 |
gaacaaaataacttctgtatttggcaatgtaacaggaccagaacatagaggttcaccccaaccaaaatcagtagtgtcaaaagacaatttagtccaagtt |
45350417 |
T |
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| Q |
113 |
gtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccatatcaattgcct |
212 |
Q |
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| T |
45350418 |
gtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccatatcaattgcct |
45350517 |
T |
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| Q |
213 |
tgtgaaccaagccaactgaaaatgaaaaaggattctccaatagttcatttgctttacacaaagaatttgttagcacaatagcattaccaaaatatccctt |
312 |
Q |
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| T |
45350518 |
tgtgaaccaagccaactgaaaatgaaaaaggattctccaatagttcatttgctttacacaaagaatttgttagcacaatagcattaccaaaatatccctt |
45350617 |
T |
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| Q |
313 |
tggaattgggggaatggatcttggcc |
338 |
Q |
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| T |
45350618 |
tggaattgggggaatgaatcttggcc |
45350643 |
T |
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Back To:
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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 40495138 - 40495262
Alignment:
| Q |
91 |
aaaagacaatttagtccaagttgtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataacta |
190 |
Q |
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| T |
40495138 |
aaaagacaacctggtccatgttgtgatcaaaagtgttgatgttaaagttggcttacttcttttaacttcaaaatagtcaataacagatctcatataacta |
40495237 |
T |
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| Q |
191 |
tctgtaaccatatcaattgccttgt |
215 |
Q |
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| T |
40495238 |
tctgtcaccatctcaattgctttgt |
40495262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 9197983 - 9198078
Alignment:
| Q |
106 |
ccaagttgtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccat |
201 |
Q |
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| T |
9197983 |
ccaagttgtgatcaaaagtgtacaagccaaagatggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtgaccat |
9198078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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