View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11895_low_15 (Length: 289)

Name: NF11895_low_15
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11895_low_15
NF11895_low_15
[»] chr5 (9 HSPs)
chr5 (35-273)||(11049849-11050087)
chr5 (85-254)||(10609754-10609923)
chr5 (68-261)||(10742691-10742884)
chr5 (73-254)||(10749011-10749192)
chr5 (55-260)||(10563041-10563246)
chr5 (55-260)||(10765105-10765310)
chr5 (73-185)||(10718963-10719075)
chr5 (142-234)||(10548894-10548986)
chr5 (114-184)||(10593832-10593902)
[»] chr6 (5 HSPs)
chr6 (73-176)||(12946673-12946776)
chr6 (73-254)||(12930308-12930489)
chr6 (73-179)||(12905218-12905324)
chr6 (73-179)||(12956110-12956216)
chr6 (73-179)||(12897597-12897703)
[»] chr2 (1 HSPs)
chr2 (73-254)||(17925402-17925583)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 11050087 - 11049849
Alignment:
Q  35 tgactgaattcaatatcatgaacaatagctttcatggtgaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactc 134  Q
    |||| ||||||||| |||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11050087 tgacagaattcaatctcatgaacaacagcttctatggagaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactc 11049988  T
Q  135 tcttgcaggagaaattcctacaaacctcacatattgctccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaatt 234  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  11049987 tcttgcaggagaaattcctacaaacctcacacattgctccaatcttaaagacttgtatttgggagggaacaatttaattggcaagataccaaatgaaatt 11049888  T
Q  235 agctctttgaaaaaacttcagtcattggccatttggaaa 273  Q
     ||||||||||||||||||| ||||||||||||||||||    
T  11049887 ggctctttgaaaaaacttcaatcattggccatttggaaa 11049849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 10609754 - 10609923
Alignment:
Q  85 gagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgctccaatcttaaag 184  Q
    |||||||||| ||||||||||||| |||||||||  |||| |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  10609754 gagttgggtcagttgctacaattgcaacaactttatctcatcaataactcttttgcaggagaaattcctacaaacctgacacattgctccaatctcaaag 10609853  T
Q  185 acttagatttgggagggaacaatttaattggcaagataccaaatgaaattagctctttgaaaaaacttca 254  Q
    | |||  ||||||||| |||||||| |||||||| ||||| | ||||||| ||||||||||||| |||||    
T  10609854 agttacgtttgggaggaaacaatttgattggcaaaataccgattgaaattggctctttgaaaaagcttca 10609923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 10742884 - 10742691
Alignment:
Q  68 atggtgaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacata 167  Q
    |||| |||||||||||||||||||||| ||||||||||||| |||||||||| || |  ||||||||| ||||||| ||||||||||||||| | |||||    
T  10742884 atggagaaattccacaagagttgggtcagttgctacaattgcaacaactttttcttactaataactcttttgcaggtgaaattcctacaaacttgacata 10742785  T
Q  168 ttgctccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaattagctctttgaaaaaacttcagtcattg 261  Q
    |||||| ||||| |||| | ||  ||||| ||||||||| || |||||||| ||||||| ||||||| ||| ||||||||||||||| ||||||    
T  10742784 ttgctcaaatctgaaagtcataactttggcagggaacaagttgattggcaaaataccaattgaaattggctatttgaaaaaacttcaatcattg 10742691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 10749192 - 10749011
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||   |||| |||||||||  | ||||||||||||||| ||||| | ||||||||||    
T  10749192 gaaatcccagaagagttgggtcggttgctacaattgcaacaacttgatctcatcaataactcgttcgcaggagaaattccttcaaacttgacatattgct 10749093  T
Q  173 ccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaattagctctttgaaaaaacttca 254  Q
    ||||||| |||| |||| || |||||||||||||| | |||||||| ||||||| ||||||| ||||||||||||| |||||    
T  10749092 ccaatctcaaaggcttaaatgtgggagggaacaatgtgattggcaaaataccaattgaaattggctctttgaaaaagcttca 10749011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 10563041 - 10563246
Alignment:
Q  55 aacaatagctttcatggtgaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattccta 154  Q
    |||||||| |||  ||| ||||| ||||  |||||||||| |||||||||| || |||| ||||  |||   ||||||||  ||| ||||||||||||||    
T  10563041 aacaatagtttttctggagaaatcccaccggagttgggtcagttgctacaactgcaacacctttatctccttaataactcgtttgtaggagaaattccta 10563140  T
Q  155 caaacctcacatattgctccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaattagctctttgaaaaaacttca 254  Q
    ||||| | ||||||||||||||||| | ||||||   ||||||||||||||| || ||||| || ||||||| ||||||| ||||||||||||| |||||    
T  10563141 caaacttgacatattgctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttca 10563240  T
Q  255 gtcatt 260  Q
     |||||    
T  10563241 ttcatt 10563246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 260
Target Start/End: Complemental strand, 10765310 - 10765105
Alignment:
Q  55 aacaatagctttcatggtgaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattccta 154  Q
    |||||||| |||  ||| ||||||||||| ||||| |||| |||||||||| || |||||||||  |||   ||||||||  || |||||||||||||||    
T  10765310 aacaatagtttttctggagaaattccacaggagttcggtcagttgctacaactgcaacaactttatctccttaataactcgtttacaggagaaattccta 10765211  T
Q  155 caaacctcacatattgctccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaattagctctttgaaaaaacttca 254  Q
     |||| | || |||||||||||||| | ||||||   ||||||||||||||| || |  || || |||| || ||||||| ||||||||||||| |||||    
T  10765210 taaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaaaccttca 10765111  T
Q  255 gtcatt 260  Q
     |||||    
T  10765110 ttcatt 10765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 10719075 - 10718963
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    ||||||||||| ||||||||   ||||||||||||| |||||||||  || | |||||||||| |||||||  |||||||||||||||| || |||||||    
T  10719075 gaaattccacatgagttgggcaagttgctacaattgcaacaactttatcttaacaataactcttttgcaggtaaaattcctacaaacctgacgtattgct 10718976  T
Q  173 ccaatcttaaaga 185  Q
    ||||||| |||||    
T  10718975 ccaatctcaaaga 10718963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 10548894 - 10548986
Alignment:
Q  142 ggagaaattcctacaaacctcacatattgctccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaatt 234  Q
    |||||||||||||||||| | ||| |||| | ||| |||||| |||||   ||| ||||||||||||| ||||| || ||||||| |||||||    
T  10548894 ggagaaattcctacaaacttgacaaattgtttcaaccttaaatacttatccttgagagggaacaatttgattggaaaaataccaattgaaatt 10548986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 10593832 - 10593902
Alignment:
Q  114 acttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgctccaatcttaaag 184  Q
    |||||| ||||| ||||||||  || |||||||||| ||||| ||| | ||| ||||||||||||||||||    
T  10593832 actttttctcagtaataactcgtttacaggagaaatccctacgaacttgacaaattgctccaatcttaaag 10593902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 12946673 - 12946776
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    ||||||||||| |||||||||| ||||||||| ||| |||||||||| |||| |||||||||| ||||||| || |||||||||||||| |||||||| |    
T  12946673 gaaattccacaggagttgggtcagttgctacatttgcaacaactttttctcaacaataactcttttgcaggtgagattcctacaaacctgacatattgtt 12946772  T
Q  173 ccaa 176  Q
    ||||    
T  12946773 ccaa 12946776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 12930308 - 12930489
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    ||||||||||| |||||||||| ||||||||| ||| |||| ||| | |||| |||||| ||| ||| ||| || |||||||||||||| ||||||||||    
T  12930308 gaaattccacaggagttgggtcagttgctacatttgcaacatcttattctcaccaataattcttttgtaggtgagattcctacaaacctgacatattgct 12930407  T
Q  173 ccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaattagctctttgaaaaaacttca 254  Q
    ||||||| |||   ||  |||||   |||||| || | | ||| || ||||||| ||||||| ||||||||||||| |||||    
T  12930408 ccaatctcaaattattgtatttgaatgggaaccatctcaatggtaaaataccaattgaaattggctctttgaaaaagcttca 12930489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 12905218 - 12905324
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    |||||||| || || ||||||| ||||||||| ||| |||||||| | ||||||||||| ||| ||| ||| || |||||||||||||| ||||||||||    
T  12905218 gaaattcctcaggatttgggtcagttgctacatttgcaacaacttattctcagcaataattcttttgtaggtgagattcctacaaacctgacatattgct 12905317  T
Q  173 ccaatct 179  Q
    |||||||    
T  12905318 ccaatct 12905324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 12956110 - 12956216
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    ||||||||||| |||||||||| ||||||||| ||| ||| |||||  ||||||||||||||| ||| ||| || ||||| |||||| | ||||||||||    
T  12956110 gaaattccacaggagttgggtcagttgctacatttgcaacgactttctctcagcaataactcttttgtaggtgagattccaacaaacttgacatattgct 12956209  T
Q  173 ccaatct 179  Q
    |||||||    
T  12956210 ccaatct 12956216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 12897597 - 12897703
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    |||||||| || || ||||||| ||||||||| ||| |||| ||| | |||| |||||| ||| ||| ||| || |||||||||||||| ||||||||||    
T  12897597 gaaattcctcaggatttgggtcagttgctacatttgcaacaccttattctcaccaataattcttttgtaggtgagattcctacaaacctgacatattgct 12897696  T
Q  173 ccaatct 179  Q
    |||||||    
T  12897697 ccaatct 12897703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 17925583 - 17925402
Alignment:
Q  73 gaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctcacatattgct 172  Q
    ||||||||||| |||||||||| ||||||||| ||| | |||||||| ||||||||||| ||| ||| ||| || |||||||||||||| |||||||| |    
T  17925583 gaaattccacaggagttgggtcagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctgacatattgtt 17925484  T
Q  173 ccaatcttaaagacttagatttgggagggaacaatttaattggcaagataccaaatgaaattagctctttgaaaaaacttca 254  Q
    | ||||| |||   ||   |||| | |||||| || | ||||| || ||||||| ||||||  |||||||||||||||||||    
T  17925483 ctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttca 17925402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University