View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_low_17 (Length: 261)
Name: NF11895_low_17
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 39238328 - 39238077
Alignment:
| Q |
1 |
tttttcctctaagaagtgtgatggtgattgaaacaatggcaaacgttggtcttttatattttctattcttggttggagtaggcatggatgcatctgcact |
100 |
Q |
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| T |
39238328 |
tttttcctctaagaagtgtgatggtgattgaaacaatggcaaacgttggtcttttatattttctattcttggttggagtaggcatggatgcatctgcact |
39238229 |
T |
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| Q |
101 |
acgacgcataggtagaaaatcaattaccatagcagtagctggtatgatattaccattcggaacaggagcactattttccgtctttttgttaaaaaacacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39238228 |
acgacgcataggtagaaaatcaattaccatagcagtagctggtatgatattaccattcggaacaggagcactattttccatctttttgttaaaaaacacc |
39238129 |
T |
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| Q |
201 |
gaaaaagcttatgtaggagcttttgttctaatgcttggtgttgttctctctg |
252 |
Q |
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| T |
39238128 |
gaaaaagcttatgtaggagcttttgttctaatgcttggtgttgttctttctg |
39238077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44056459 - 44056384
Alignment:
| Q |
1 |
tttttcctctaagaagtgtgatggtgattgaaacaatggcaaacgttggtcttttatattttctattcttggttgg |
76 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||| ||||||||||| |
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| T |
44056459 |
ttttccctctaagaagtgtgatggtgattgaaacaatggcgaatgttggtcttctttattttcttttcttggttgg |
44056384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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