View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_low_18 (Length: 254)
Name: NF11895_low_18
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 39238317 - 39238473
Alignment:
| Q |
1 |
ttagaggaaaaacagcatctgcaaatgttttgtttcgaccaagaacagaaggacccaatactatccctccctgcattcacacaacataacatgtatattt |
100 |
Q |
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| T |
39238317 |
ttagaggaaaaacagcatctgcaaatgttttgtttcgaccaagaacagaaggacccaatactatccctccctgcattcacacaacataacatgtatattt |
39238416 |
T |
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| Q |
101 |
aacaagataactttaccaaaatttatgaccttcaataaaatgattctaggagtatga |
157 |
Q |
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| T |
39238417 |
aacaagataactttaccaaaatttatgaccttcaataaaatgattctaggagtatga |
39238473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 39238474 - 39238526
Alignment:
| Q |
184 |
agacgtccctgtaaaacttttttacattaacaatgcataaaaaatattctaaa |
236 |
Q |
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| T |
39238474 |
agacgtccctgtaaaacttttttacattaacaatgcataaaaaatattctaaa |
39238526 |
T |
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