View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11895_low_19 (Length: 248)

Name: NF11895_low_19
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11895_low_19
NF11895_low_19
[»] chr7 (2 HSPs)
chr7 (9-248)||(44501358-44501597)
chr7 (77-165)||(32413624-32413712)
[»] chr3 (10 HSPs)
chr3 (54-238)||(45870407-45870593)
chr3 (72-240)||(20994984-20995154)
chr3 (56-158)||(45856889-45856991)
chr3 (195-248)||(20977477-20977530)
chr3 (110-165)||(25601740-25601795)
chr3 (72-240)||(20981825-20981995)
chr3 (75-133)||(778229-778287)
chr3 (195-248)||(2996397-2996450)
chr3 (77-158)||(25596902-25596983)
chr3 (195-239)||(20949493-20949537)
[»] chr4 (1 HSPs)
chr4 (54-248)||(3978077-3978273)
[»] chr5 (3 HSPs)
chr5 (68-240)||(7894982-7895155)
chr5 (54-240)||(38142059-38142247)
chr5 (54-106)||(7976853-7976905)
[»] chr6 (7 HSPs)
chr6 (56-166)||(33844279-33844389)
chr6 (108-165)||(33840288-33840345)
chr6 (77-165)||(7115536-7115624)
chr6 (77-165)||(7120608-7120696)
chr6 (77-165)||(7124012-7124100)
chr6 (77-133)||(7140758-7140814)
chr6 (77-133)||(8680372-8680428)
[»] chr2 (1 HSPs)
chr2 (78-166)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 44501597 - 44501358
Alignment:
Q  9 agaagaaattaaaactcactgagagtgtaagtaaagactgacttggcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaa 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501597 agaagaaattaaaactcactgagagtgtaagtaaagaccgacttggcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaa 44501498  T
Q  109 cgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcacttatagcattcttcagattttcacacttacaagatatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44501497 cgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcacttatagcattcttcagattttcacactttcaagatatt 44501398  T
Q  209 caataaattcgtgtctaaggttttatctcttcacgattcc 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44501397 caataaattcgtgtctaaggttttatctcttcacgattcc 44501358  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 32413624 - 32413712
Alignment:
Q  77 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 165  Q
    ||||||||||| || | ||||||  ||||| |||| ||||| ||||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  32413624 cttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 45870593 - 45870407
Alignment:
Q  54 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 153  Q
    ||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| |||| ||||| |||||| |||| || || ||||  | |||||||||    
T  45870593 gcgacctacctgactgtgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatctttg 45870494  T
Q  154 gaaacgtcttcctgcacttata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctct 238  Q
    ||||||||||||| | ||||||  |||||||   || ||||  ||||| ||||||||||  | ||| || |||| ||||||||||||    
T  45870493 gaaacgtcttccttctcttatattgcattctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctct 45870407  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 20995154 - 20994984
Alignment:
Q  72 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 171  Q
    ||||||||||||| || || ||| ||||  ||||| |||||||||| |||||  |||| ||||| | ||  |||||||||||||||||||||||||| ||    
T  20995154 ttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcctgctct 20995055  T
Q  172 t--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttc 240  Q
    |  || ||||  |  ||| ||||  |||| |||||||||||  | ||||||||||||| ||||||||||||    
T  20995054 tacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttc 20994984  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 45856991 - 45856889
Alignment:
Q  56 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 155  Q
    ||||||| |||||  |||||||| ||||||||||||||| |||| || ||| |||| |||   ||||||||||||||||| ||||  |||||||| ||||    
T  45856991 gacttacatgactatattatcctccacatactgtcttttctgaacgctaaagacgcggttggaacttgcattttgtccccaagatacaaggatctctgga 45856892  T
Q  156 aac 158  Q
    |||    
T  45856891 aac 45856889  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 20977477 - 20977530
Alignment:
Q  195 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcc 248  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||| |||||||    
T  20977477 acttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcc 20977530  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 25601740 - 25601795
Alignment:
Q  110 gctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 165  Q
    |||||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||    
T  25601740 gctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 25601795  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 20981995 - 20981825
Alignment:
Q  72 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 171  Q
    ||||||||||||| || || ||| ||||  ||||| | |||||||| |||||  |||| ||||| | ||  || ||||||||||||||||||||||| ||    
T  20981995 ttatccttcacattctctcctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcctgctct 20981896  T
Q  172 t--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttc 240  Q
    |  || ||||  |  ||| ||||  | || |||||||||||  | ||||||||||||| ||||||||||||    
T  20981895 tacattgcataatagagactttcgtaatttcaagatattcaccacattcgtgtctaagattttatctcttc 20981825  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 778287 - 778229
Alignment:
Q  75 tccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 133  Q
    ||||||||||||| ||||||||||| |||||| | || || || |||||||||||||||    
T  778287 tccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtcc 778229  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 2996450 - 2996397
Alignment:
Q  195 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcc 248  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||  |||||||    
T  2996450 acttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcc 2996397  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 25596902 - 25596983
Alignment:
Q  77 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaac 158  Q
    ||||||||  |||| ||||||||| ||||  | || ||||| ||||||||||||||  | ||||||||| ||||||||||||    
T  25596902 cttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaac 25596983  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 20949493 - 20949537
Alignment:
Q  195 acttacaagatattcaataaattcgtgtctaaggttttatctctt 239  Q
    ||||||||||||||||  ||||||||||||||  |||||||||||    
T  20949493 acttacaagatattcaccaaattcgtgtctaaaattttatctctt 20949537  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 248
Target Start/End: Original strand, 3978077 - 3978273
Alignment:
Q  54 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 153  Q
    |||||||||||||  ||||||| ||||||||||| || ||||| ||  ||||  |||| ||||| |||||| |||| ||| | ||||  |||||||||||    
T  3978077 gcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagatataaggatctttg 3978176  T
Q  154 gaaacgtcttcctgcactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcc 248  Q
    ||||||||||||| | |||  || |||||||||||| |||    ||||||||| |||||  | ||| |||||||| ||||||| ||||| |||||||    
T  3978177 gaaacgtcttcctactcttacattgcattcttcagactttggagcttacaagaaattcaccagattagtgtctaaagttttatttcttcgcgattcc 3978273  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 7894982 - 7895155
Alignment:
Q  68 tgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctg 167  Q
    ||||||||||||||||| || || ||||||||||||||| | || ||||| ||||||||||||||   |||||||||| |||| ||||||| ||| || |    
T  7894982 tgcattatccttcacattctttcctttttgaatgccaaacaagccgttca-acttgcattttgtctatcagatggaagaatctctggaaacttctacccg 7895080  T
Q  168 cactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttc 240  Q
    | |||  ||   ||||| |||||||||    ||||| || |||||  ||||| ||||||||||||||||||||||    
T  7895081 ctcttagattcgattctacagattttcgattttacacgaaattcacaaaatttgtgtctaaggttttatctcttc 7895155  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 38142247 - 38142059
Alignment:
Q  54 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 153  Q
    ||||||||||||||||  |||||||||||||||| || |||||||| || ||| | || |||   ||||  ||| |||||   ||||||| |||||| ||    
T  38142247 gcgacttacctgactgtgttatccttcacatactctcctttttgaacgctaaacaggcagttacaacttcaattctgtccttaagatggagggatctatg 38142148  T
Q  154 gaaacgtcttcctgcacttata--gcattcttcagattttcacact-tacaagatattcaataaattcgtgtctaaggttttatctcttc 240  Q
    ||||| ||||||||| ||||||  | |||||||||| ||||  ||| |||  ||||||||| |||||||||  || ||||||| ||||||    
T  38142147 gaaacttcttcctgctcttatattggattcttcagactttcgaactatac-cgatattcaacaaattcgtgcatagggttttaactcttc 38142059  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 7976905 - 7976853
Alignment:
Q  54 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaa 106  Q
    |||||||||| || ||||||||||||||||| || || |||||||| ||||||    
T  7976905 gcgacttacccgaatgcattatccttcacattctctcctttttgaacgccaaa 7976853  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 33844389 - 33844279
Alignment:
Q  56 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 155  Q
    |||||||| ||||||||| |  || ||||  |||| ||||||||  || ||||||| ||||| ||||||||||||||| ||||||||||  |||| ||||    
T  33844389 gacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccagatggaaacatctctgga 33844290  T
Q  156 aacgtcttcct 166  Q
    ||||| |||||    
T  33844289 aacgtattcct 33844279  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 33840345 - 33840288
Alignment:
Q  108 acgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 165  Q
    |||||||||  ||||||||||||||| ||||||||||  |||||||||||||| ||||    
T  33840345 acgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 33840288  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 7115624 - 7115536
Alignment:
Q  77 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 165  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7115536  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 7120696 - 7120608
Alignment:
Q  77 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 165  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7120608  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 7124100 - 7124012
Alignment:
Q  77 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 165  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7124012  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 7140814 - 7140758
Alignment:
Q  77 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 133  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 7140758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 8680428 - 8680372
Alignment:
Q  77 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 133  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 8680372  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 43864136 - 43864048
Alignment:
Q  78 ttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcct 166  Q
    ||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||   |||||||   ||||||||||  ||||||||    
T  43864136 ttcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcct 43864048  T

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