View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_low_2 (Length: 757)
Name: NF11895_low_2
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 11 - 742
Target Start/End: Complemental strand, 55869100 - 55868369
Alignment:
| Q |
11 |
cagagagaggattaatatatctttcgtcatcctttcaataagatatgtacgtactgcatcattatacatctcgctaatatctgaattcggttagtgtgtt |
110 |
Q |
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| T |
55869100 |
cagagagaggattaatatatctttcgtcatcctttcaataagatatgtacgtactgcatcattatacatctcgctaatatctgaattcggttagtgtgtt |
55869001 |
T |
|
| Q |
111 |
tacaaatgaaaatatagttgcaggaaggttaaaacaaaatcattgttcctcttttcctcccttgattgtttaaacatttgcactagtaagaacacattct |
210 |
Q |
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| T |
55869000 |
tacaaatgaaaatatggttgcaggaaggttaaaacaaaatcattgttcctcttttcctcccttgattgtttaaacatttgcactagtaagaacacattct |
55868901 |
T |
|
| Q |
211 |
tcactgttttgcaaagcctaaaacaagataacgttatcgtttgcctcattggattatctcagaacacagtagcgact-ctggataactaataaaagttac |
309 |
Q |
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| T |
55868900 |
tcactgttttgcaaagcctaaaacaagataacgttattgtttgcctcattggattatctcagaacacagtagcgactcctggataactaataaaagttac |
55868801 |
T |
|
| Q |
310 |
caatttgttgccatgggcttggccttgtgcagcaaatgcagcagggagtgcagtggaggcaggcaagaaactaggttgtgcattcaccaataagagaaga |
409 |
Q |
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| T |
55868800 |
caatttgttgccatgggcttggccttgtgcagcaaatgcagcagggagtgcagtggaggcaggcaagaaactaggttgtgcattcaccaataagagaaga |
55868701 |
T |
|
| Q |
410 |
tttcagctgctgctcccctatttcattttgaacaattggcaattattgattatcagtgtaaatggttagaatgtaaatgggggaagcttttgtactaaga |
509 |
Q |
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| T |
55868700 |
tttcagctgctgctcccctatttcattttgaacaattggcaattattgattatcagtgtaaatggttagaatgtaaatgggggaagcttttgtactaaga |
55868601 |
T |
|
| Q |
510 |
aacaagttttgtatttctctaatttattagaatataaatggtaaccaatctcagattacctaggttcagcaaaatggcaaaccttccggttgggagtaga |
609 |
Q |
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| T |
55868600 |
aacaagttttgta-ttctctaatttattagactataaatggtaaccaatctcagattacctaggttcagcaaaatggcaaaccttctggttgggagtaga |
55868502 |
T |
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| Q |
610 |
ataaaatttaaggatggtgtggcctagtttcctcgctaagatttttgtgaagcacgctgtctaggacaggaacacttgtatagaaaacattataagcaat |
709 |
Q |
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| T |
55868501 |
ataaaatttaaggatggtgtggcctagtttcctcgctaagatttttgtgaagcacgctgtctaggaaaggaacacttgtatagaaaacattataagcaat |
55868402 |
T |
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| Q |
710 |
caagattacagaattgtcgaggctagttctaga |
742 |
Q |
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| T |
55868401 |
caagattacagaattgttgaggctagttctaga |
55868369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 31538215 - 31538320
Alignment:
| Q |
290 |
ggataactaataaaagttaccaatttgttgccatgggcttggccttgtgcagcaaatgcagcagggagtgcagtggaggcaggcaagaaactaggttgtg |
389 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| ||| |
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| T |
31538215 |
ggataactaataaagggtaccaatttgttgccatgggcttggccttgtgcagcaaatgccgcagggagtgcagtgggggtaggcaagaaactaggaggtg |
31538314 |
T |
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| Q |
390 |
cattca |
395 |
Q |
| |
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|||||| |
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| T |
31538315 |
cattca |
31538320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 31537739 - 31537856
Alignment:
| Q |
74 |
atacatctcgctaa-tatctgaattcggttagtgtgtttacaaatgaaaatatagttgcaggaaggttaaaacaaaatcattgttcctcttttcctccct |
172 |
Q |
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|||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||| |||| ||| |||||||||||||| |||| |||||| | ||| |
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| T |
31537739 |
atacatctcggtaaatatctgaattcggttcgtgtgagtacaaaggaaaatatagctgcaccaagtttaaaacaaaatcacccttccacttttcattcct |
31537838 |
T |
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| Q |
173 |
tgattgtttaaacatttg |
190 |
Q |
| |
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| T |
31537839 |
tgattgtttaaacatttg |
31537856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 580 - 738
Target Start/End: Original strand, 38756203 - 38756362
Alignment:
| Q |
580 |
aaaatggcaaaccttccgg-ttgggagtagaataaaatttaaggatggtgtggcctagtttcctcgctaagatttttgtgaagcacgctgtctaggacag |
678 |
Q |
| |
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||||||||||||||||| | |||| ||||||||||||||| |||||| || || ||||||||| ||||||| ||||| |||||| ||| |||| |||| |
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| T |
38756203 |
aaaatggcaaaccttcccgcttggcagtagaataaaatttgaggatgctggagcacagtttcctcactaagatctttgtcaagcacactgactagaacag |
38756302 |
T |
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| Q |
679 |
gaacacttgtatagaaaacattataagcaatcaagattacagaattgtcgaggctagttc |
738 |
Q |
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||||||| |||||||||||||||||||| |||||| | ||||||||| |||||| |||| |
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| T |
38756303 |
gaacactagtatagaaaacattataagccatcaagctaacagaattgaagaggctggttc |
38756362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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