View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_low_21 (Length: 243)
Name: NF11895_low_21
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45350802 - 45351027
Alignment:
| Q |
1 |
tcaggattgaaaaggaaggatttgtggataatgttttctccttcatagattttttctgtgtttgatgaatcttcaatttcatcaaattcatggtgttgga |
100 |
Q |
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| T |
45350802 |
tcaggattaaaaaggaaggatttgtggataatgttttctccttcgtagattttttctgtgtttgataaatcttcaatttcatcaaattcatggtgttgga |
45350901 |
T |
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| Q |
101 |
actctactttgggaggatcacgtgatttgagtatggttctatcaagaaatggtggagtctttaagtctaaacctctagctgtttcagcccatgcattcac |
200 |
Q |
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| T |
45350902 |
actctactttgggaggatcacgtgatttgagtatggttctatcaagaaatggtggagtctttaagtctaaacctctagctgtttcagcccatgcattcac |
45351001 |
T |
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| Q |
201 |
aaactccatagcacatagtccatctt |
226 |
Q |
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| T |
45351002 |
aaactccatagcacatagtccatctt |
45351027 |
T |
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Back To:
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 40495609 - 40495760
Alignment:
| Q |
63 |
tgatgaatcttcaatttcatcaaattcatggtgttggaactctactttgggaggatcacgtgatttgagtatggttctatcaagaaatggtggagtcttt |
162 |
Q |
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|||| ||||||||| |||||| ||||| || || |||||||| || || || | ||||||||||||||| |||||||||||||||||||| | ||| |
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| T |
40495609 |
tgataaatcttcaagttcatcgaattcgtgatgcgtgaactctatttgtggggggttacgtgatttgagtattgttctatcaagaaatggtgggattttt |
40495708 |
T |
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| Q |
163 |
aagtctaaacctctagctgtttcagcccatgcattcacaaactccatagcac |
214 |
Q |
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| T |
40495709 |
aagtctagtcctcttgctgtgtcaccccaggagttcacaaattgcatagcac |
40495760 |
T |
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